PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00052.1.p
Common NameLOC105969913, MIMGU_mgv1a018750mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 274aa    MW: 31473.9 Da    PI: 6.2809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-121461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd +l   +   G  +W+ +++  g+ R++k+c++rw +yl
  Migut.H00052.1.p 14 RGPWTIEEDHKLMTFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61
                      89******************************99************97 PP
2Myb_DNA-binding51.13e-1667110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+ E+ ++++++++lG++ W++Ia++++ gRt++++k++w++
  Migut.H00052.1.p  67 RGALTEIEENQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                       7888999***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.317961IPR017930Myb domain
SuperFamilySSF466891.57E-2711108IPR009057Homeodomain-like
SMARTSM007171.9E-51363IPR001005SANT/Myb domain
PfamPF002492.3E-101461IPR001005SANT/Myb domain
CDDcd001673.40E-41661No hitNo description
PROSITE profilePS5129425.68662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2465117IPR009057Homeodomain-like
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002498.0E-1567110IPR001005SANT/Myb domain
CDDcd001671.92E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDHKLMTFIL NNGIQCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAL TEIEENQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKQQQ  120
SLVNDHSSSN NTDQNNDELV VEISRPGKGD QIQPAAAEEE STKESRDGQN SVHHLMNNYD  180
DHETNICTSM TDMDYLWIMS TNQETNNYSS NFPSTASCYT PLFCSEQNSV STNNYHNSTG  240
GEESTITNHE QWVESIDHPM LSWDAINQQL FFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00052.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850141.10.0PREDICTED: myb-related protein 315-like
SwissprotP813941e-73MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A022RXM10.0A0A022RXM1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-76myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]