PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H00048.2.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 853aa MW: 97842.6 Da PI: 6.2967

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00048.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.7	3.9e-23	173	260	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Yn+YA + GFs+rk+ ++sk +g +++r+++C ++g+ ++++++ + +++r etrtgC a+++++++++gk++v+++e HnHel+ Migut.H00048.2.p 173 KCYNRYALMEGFSIRKDFVNRSKVTGFVVSRRYTCHRQGYGSTKRDA--NVNKPRRETRTGCLAHMTITRQTNGKYRVIHFERRHNHELV 260 58*************************************999888..8999*********************************97 PP
2	FAR1	88.7	8.2e-28	309	397	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+++C +eg+r+++k+ +k +r+r+etr+gC a+l++++++dg++++t++e+ HnHel+ Migut.H00048.2.p 309 EFYNAYAARVGFSVRKDYVNRSKVDGAVASRRYTCFREGYRQNDKRG-SKVKRPRKETRVGCMAQLVISRQSDGRYRITHFEERHNHELV 397 6*****************************************999.99************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-21	174	260	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.7E-25	309	397	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-28	518	612	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.484	797	833	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.7E-6	808	835	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.1E-4	810	832	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence Send to blast
MDTSLDAEVQ GTSKDDVREK VDPTSLVDAD MNQISEAHNL SYDADVAFVH EQTSVSQEAS 60 SAEKDGMDMD SESTYSCFNS SSDEKSIDSV AAHELTTHNS DHNGLNKDRE YENRSSKTSS 120 SDNDHSPGTS SNNQPASTFD ALSGSVQVVE DGIGEYVVPN LGVEFEAEEH AYKCYNRYAL 180 MEGFSIRKDF VNRSKVTGFV VSRRYTCHRQ GYGSTKRDAN VNKPRRETRT GCLAHMTITR 240 QTNGKYRVIH FERRHNHELV TPFTAHLLPA QKRISFVETV EAESDVATSV PDGVPKLGMG 300 FDSEDLAYEF YNAYAARVGF SVRKDYVNRS KVDGAVASRR YTCFREGYRQ NDKRGSKVKR 360 PRKETRVGCM AQLVISRQSD GRYRITHFEE RHNHELVHAC KVRMLRSQKR SMTNQNGESS 420 PYGGAEMQPK SLAELLLTGV GIEDDFYDPI DHEMRLTSKR AYYMKQEEAE SLNLYLQSKK 480 LKDPSFVYCV QLDVEEEMTN FFWADEKMLV DYGDFGDVVY FDSTYRLNKD WRPLVLFFGI 540 NNHKQILVFG AAFVYGDTSE SFKWLFRTFV KAMSGKTPKT ILSDREAAIT EAIVSELPET 600 HHRLCTWQIY QNALKHLSQI GVNSDSFSSD LCGVFFNPEE EEFVNSWKVM LDTYGLWEND 660 LLHGIFEERE KWAVPYNKHI FAADIETALL SEGSITSVRK YLKPESHVLQ FVKHFGRVVN 720 EWRYKELEAN YDMGHHLPRL MGDVVMLKQV REVYTPVIFK MFHQEYENCL NNVINECIDT 780 ESSVEFKVST YGQVRQYTVL YSSENDSVVC SCMKFQFVGI LCSHALKVLD YRNIKIVPSQ 840 YILKRWTRKA RE*

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence Send to blast

MDTSLDAEVQ GTSKDDVREK VDPTSLVDAD MNQISEAHNL SYDADVAFVH EQTSVSQEAS  60
SAEKDGMDMD SESTYSCFNS SSDEKSIDSV AAHELTTHNS DHNGLNKDRE YENRSSKTSS  120
SDNDHSPGTS SNNQPASTFD ALSGSVQVVE DGIGEYVVPN LGVEFEAEEH AYKCYNRYAL  180
MEGFSIRKDF VNRSKVTGFV VSRRYTCHRQ GYGSTKRDAN VNKPRRETRT GCLAHMTITR  240
QTNGKYRVIH FERRHNHELV TPFTAHLLPA QKRISFVETV EAESDVATSV PDGVPKLGMG  300
FDSEDLAYEF YNAYAARVGF SVRKDYVNRS KVDGAVASRR YTCFREGYRQ NDKRGSKVKR  360
PRKETRVGCM AQLVISRQSD GRYRITHFEE RHNHELVHAC KVRMLRSQKR SMTNQNGESS  420
PYGGAEMQPK SLAELLLTGV GIEDDFYDPI DHEMRLTSKR AYYMKQEEAE SLNLYLQSKK  480
LKDPSFVYCV QLDVEEEMTN FFWADEKMLV DYGDFGDVVY FDSTYRLNKD WRPLVLFFGI  540
NNHKQILVFG AAFVYGDTSE SFKWLFRTFV KAMSGKTPKT ILSDREAAIT EAIVSELPET  600
HHRLCTWQIY QNALKHLSQI GVNSDSFSSD LCGVFFNPEE EEFVNSWKVM LDTYGLWEND  660
LLHGIFEERE KWAVPYNKHI FAADIETALL SEGSITSVRK YLKPESHVLQ FVKHFGRVVN  720
EWRYKELEAN YDMGHHLPRL MGDVVMLKQV REVYTPVIFK MFHQEYENCL NNVINECIDT  780
ESSVEFKVST YGQVRQYTVL YSSENDSVVC SCMKFQFVGI LCSHALKVLD YRNIKIVPSQ  840
YILKRWTRKA RE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00048.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012850104.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G9GNZ5	0.0	A0A2G9GNZ5_9LAMI; Uncharacterized protein
STRING	Migut.H00048.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-99	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Migut.H00048.2.p