PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G01095.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 259aa    MW: 29430.2 Da    PI: 9.634
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G01095.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.51.4e-121047239
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                       i+n+  r+  f kR++gi K A+ELS+LC++ + +ii
  Migut.G01095.1.p 10 LIKNEKVRNAAFEKRKKGIVKAANELSTLCGVHIGMII 47
                      599*******************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.269147IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-11160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-16280IPR002100Transcription factor, MADS-box
CDDcd002662.68E-15269No hitNo description
PRINTSPR004041.1E-6323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRGKLRMEL IKNEKVRNAA FEKRKKGIVK AANELSTLCG VHIGMIINEP GQNSNEPTIW  60
PANREVISKL IDSYKSKPAG NDCRYGTYNL PAFFKNQTEK IEDEVNKLRK RTREVKYPKW  120
DERLDTCSED ELKDFAGKLT AKIESARVRI NSIKVSRSTV FVNPSAEQFQ QQQYYDGRFN  180
MGNQRMMIMN NGNYAYNNTQ DNRMPNWNVG NYGFGFDESR VPNGGFDPNF GNYGMMRVNG  240
GAGNVFYSAE CGAHYALH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.G01095.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853745.10.0PREDICTED: agamous-like MADS-box protein AGL21
TrEMBLA0A022Q4W91e-174A0A022Q4W9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-20M-type_MADS family protein