PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G00870.1.p | ||||||||
Common Name | LOC105950586, MIMGU_mgv1a025007mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29206.7 Da PI: 10.0941 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.8e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd ll +++++G g+W+ +++ g+ R++k+c++rw +yl Migut.G00870.1.p 14 RGPWSAEEDTLLTTYIQLHGEGQWRFLPNKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+v+++ lG++ W++Ia +++ gRt++++k++w++yl Migut.G00870.1.p 67 RGNISEDEEDLIVRLHGILGNR-WSLIAGRLP-GRTDNEIKNHWNTYL 112 7899******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.59 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.75E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.391 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.31E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGRSPCCSKV GLNRGPWSAE EDTLLTTYIQ LHGEGQWRFL PNKAGLLRCG KSCRLRWMNY 60 LRPGLKRGNI SEDEEDLIVR LHGILGNRWS LIAGRLPGRT DNEIKNHWNT YLLKKLKNNK 120 DSPESPKTKK STATAAKGKK KKKPKRKKKK NIVKVDEDKI GNNEKLIELS AQSKNESNNP 180 PKSKVYMPKP TRVSPGFSYV PPVEELPQLF GVFGGDGEEE EFDLGGGYIL PMLRPSDSLI 240 PSEVDMLEKV YNEYLQLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 147 | KGKKKKKPKRKK |
2 | 138 | 149 | KKKKKPKRKKKK |
3 | 139 | 149 | KKKKPKRKKKK |
4 | 141 | 149 | KKPKRKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G00870.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829406.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | Q9SZP1 | 9e-59 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A022PS05 | 0.0 | A0A022PS05_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 2e-58 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Migut.G00870.1.p |
Entrez Gene | 105950586 |