PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G00474.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 27137.6 Da PI: 6.1042 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.8e-10 | 87 | 134 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f+eL +l + + K +K +iL A++ +++L Migut.G00474.1.p 87 TKACRERMRREKLNDRFSELCAVLQPG---KPVKTDKLAILADAIRALNQL 134 5778**********************9...99**************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.915 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-7 | 87 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.21E-6 | 87 | 139 | No hit | No description |
SMART | SM00353 | 5.5E-8 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-12 | 89 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-11 | 91 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MNHHHVHVES FDENCWCDLL DYSSLLDDVV PSADLSRNPP PPPQHTQNVG MATDVSISET 60 SSQVSECAER EFRRKRVRSD VDGGTGTKAC RERMRREKLN DRFSELCAVL QPGKPVKTDK 120 LAILADAIRA LNQLKADTQE YTEMNERLLE EIKSLKAEKN ELREEKLTLK ADKEKIEQQL 180 KTTSVSPIGF MPAHPPLYQA EVNKVPMFPN YGFVPMWHYL PQSTRDTSQD HELRPPAA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G00474.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851057.1 | 1e-179 | PREDICTED: transcription factor bHLH104-like | ||||
Swissprot | Q8L467 | 2e-65 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A022QFH9 | 1e-115 | A0A022QFH9_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.G00474.1.p | 1e-179 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4762 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 8e-68 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.G00474.1.p |