PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.G00093.2.p

Common Name

MIMGU_mgv1a001025mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

CAMTA

Protein Properties

Length: 932aa MW: 105483 Da PI: 7.4302

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.G00093.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166.9	3.3e-52	30	147	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 l+e k+rwl+++ei+a+L n+++++++ ++k+ pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ pt Migut.G00093.2.p 30 LEEaKSRWLRPNEIHAVLCNHKHFTVHVKPKNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPT 122 55669************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 f rrcywlL+++le+ivlvhy+e++ Migut.G00093.2.p 123 FVRRCYWLLDKSLEHIVLVHYRETQ 147 ********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.971	26	152	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.0E-75	29	147	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.2E-46	32	145	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	9.8E-10	382	467	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.32E-17	550	679	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.49E-16	562	677	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.4E-17	562	680	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.3E-7	564	647	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.494	573	650	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.968	618	650	IPR002110	Ankyrin repeat
SMART	SM00248	1.8E-6	618	647	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	5.31E-7	746	832	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	23	781	803	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.071	782	811	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	1.9E-4	804	826	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.798	805	829	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.4E-4	806	826	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	885	907	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.297	887	915	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MEINTVPGRL VGSEIHGFRT MEDLEVGAML EEAKSRWLRP NEIHAVLCNH KHFTVHVKPK 60 NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDS 120 PTFVRRCYWL LDKSLEHIVL VHYRETQELQ GSPATPVNSN SSPAVSDPSA SWPLSEESDS 180 AGHQVNYGSS MSPLERNDSM TIKNHQQTLH EINTLEWDEL VVPDDLDKLN SPEEVQFAGF 240 ELANQYQTSN NRTNDDAVST SKVTPQSSGN SFYEQVGKSN SMNHKNSNNL SYQTVGHEMN 300 VHSETMISGL GTLSGASSIY NLAKDGLQAQ DSFGRWATYD IDNSLESLVD QELESSVLNG 360 HQSFSYQKID NHQPSPPGQI FNITDISPAS ALSTEETKIL VIGFFSEGQL PRTDSKLYLA 420 CGDSIFPLEI VQGGVFRCLI PPQTPGSVNL YMTFDGHKPI SQVLTFEVRA PVQPNRMVSF 480 ENKTDWKEFQ LQLRLAHLLF SSAKGLSIYN TKISQTALKE AKAFAQKTSH ISNGWVFLSK 540 MIEERQMSFP QAKDQLFELT LHNRLLEWLL EKVAAGSKIS ERDEQGQGVI HLCAILGYTW 600 AVYPFSWSGL SLDYRDKHGW TALHWAAYYG REKMVATLLS AGAKPNLVTD PTSQNPGGCN 660 AADLASTNGY DGLAAYLAEK ALVEQFKEMT VAGNVSGSLQ TSSNEPINPE NFTEEELYLK 720 DTLIAYRTAA DAAARINAAF REHSFKIRKQ AVESSNPEIE ARNIVAAMKI QHAFRKYETH 780 KKLAAAARIQ YRFRTWKIRK DFLNMRRQAI KIQAHFRGFQ VRRHYRQIVW SVGVLEKAVL 840 RWRLKRKGFR GLQVQPETAV VDPNQDGEVV EEAFFRASRK QAEDRVERSV VRVQAMFRSK 900 QAQEEYRRMK LEHSKAKLEY DELLHPDDEM G*

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MEINTVPGRL VGSEIHGFRT MEDLEVGAML EEAKSRWLRP NEIHAVLCNH KHFTVHVKPK  60
NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDS  120
PTFVRRCYWL LDKSLEHIVL VHYRETQELQ GSPATPVNSN SSPAVSDPSA SWPLSEESDS  180
AGHQVNYGSS MSPLERNDSM TIKNHQQTLH EINTLEWDEL VVPDDLDKLN SPEEVQFAGF  240
ELANQYQTSN NRTNDDAVST SKVTPQSSGN SFYEQVGKSN SMNHKNSNNL SYQTVGHEMN  300
VHSETMISGL GTLSGASSIY NLAKDGLQAQ DSFGRWATYD IDNSLESLVD QELESSVLNG  360
HQSFSYQKID NHQPSPPGQI FNITDISPAS ALSTEETKIL VIGFFSEGQL PRTDSKLYLA  420
CGDSIFPLEI VQGGVFRCLI PPQTPGSVNL YMTFDGHKPI SQVLTFEVRA PVQPNRMVSF  480
ENKTDWKEFQ LQLRLAHLLF SSAKGLSIYN TKISQTALKE AKAFAQKTSH ISNGWVFLSK  540
MIEERQMSFP QAKDQLFELT LHNRLLEWLL EKVAAGSKIS ERDEQGQGVI HLCAILGYTW  600
AVYPFSWSGL SLDYRDKHGW TALHWAAYYG REKMVATLLS AGAKPNLVTD PTSQNPGGCN  660
AADLASTNGY DGLAAYLAEK ALVEQFKEMT VAGNVSGSLQ TSSNEPINPE NFTEEELYLK  720
DTLIAYRTAA DAAARINAAF REHSFKIRKQ AVESSNPEIE ARNIVAAMKI QHAFRKYETH  780
KKLAAAARIQ YRFRTWKIRK DFLNMRRQAI KIQAHFRGFQ VRRHYRQIVW SVGVLEKAVL  840
RWRLKRKGFR GLQVQPETAV VDPNQDGEVV EEAFFRASRK QAEDRVERSV VRVQAMFRSK  900
QAQEEYRRMK LEHSKAKLEY DELLHPDDEM G*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.G00093.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012827760.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A022RYH3	0.0	A0A022RYH3_ERYGU; Uncharacterized protein
STRING	Migut.G00093.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Migut.G00093.2.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]