PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G00084.1.p | ||||||||
Common Name | LOC105976331, MIMGU_mgv1a011956mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 30061 Da PI: 5.8156 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.8e-20 | 76 | 126 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r+++ +g+W+AeIrdp++ r++lg+f +ae+Aa+a+++a+k+++g Migut.G00084.1.p 76 STYRGIRQRP-WGKWAAEIRDPKK---GVRVWLGTFNSAEQAARAYDQAAKRIRG 126 56********.**********954...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.84E-32 | 76 | 136 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-22 | 76 | 136 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-32 | 77 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-37 | 77 | 140 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-14 | 77 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 77 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MCGGSIISDE PIIKRRGKLT TEEFWAELDT ISHFWGFDFS DDAAKNQPEP DAQKPGPHNK 60 GKKEKEEKGK ERGRKSTYRG IRQRPWGKWA AEIRDPKKGV RVWLGTFNSA EQAARAYDQA 120 AKRIRGDKAK LNFPANHEPP TPPQQPPPKK IRVVPEPQSK PSQVVMDCER QGAEPCYLKG 180 CEPIKDELSS WESLLGLEEP NQVIMEPSQV IMEPIKDELS SWESFLGLEP AVKPSPFGVL 240 DETMDSVDFW MMHEFAAAQQ NNLFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 78 | 134 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G00084.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012857056.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | A0A022Q3E4 | 0.0 | A0A022Q3E4_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-40 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.G00084.1.p |
Entrez Gene | 105976331 |