PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G00048.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 550aa    MW: 61789 Da    PI: 5.2348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G00048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.39.2e-851765441374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPil 91 
                       lv+ Ll cAe v++++ e+a+++L +   ++sp+g+p+qRl++yfteAL +++ +++ ++ ++  +++t++     +++   + +f++  P+ 
  Migut.G00048.1.p 176 LVQNLLLCAEKVNAKQYERAKKILLECDRMSSPKGTPIQRLVFYFTEALYEKIDGETGNITRKGLSKKTEDPLeaLKSSEETMIAFHKEVPLS 268
                       6899***************************************************777777666555444332233333344445******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       +++ ++  q +++ +  ++++H i f+i +G+Q   L+qaL++  +   +l+iT vg +  +s+ ++e+tg +L++f ++lg +f+fnv++++
  Migut.G00048.1.p 269 QITKFAGIQSVVDNIGDAKKIHFIIFEIRKGIQCTILMQALSE--NCVEHLKITSVGTK--TSRASMEKTGTQLTSFSNSLGFRFSFNVVIVD 357
                       ******************************************9..5666*********5..5******************************* PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +++dl+ ++++++++Ea++V   ++l ++  +s  le+    ++kl+k l+P v+vv+e ea++ns+ F++rf+eal +y a f+ +   + +
  Migut.G00048.1.p 358 DISDLDKSQFKIEENEAIIVYAEFALTNMIGQSDRLEH----LMKLIKALNPCVMVVTEVEANCNSPIFVDRFVEALFFYGASFELMGDCMKN 446
                       ******************************88888877....************************************************9** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                       ++++r   E  ++g +i+n++a+eg er+ rh +++ Wr+ +e++GF++++ls++   qa+l+l++++ +d ++ + + +sl++gWk+ p+ s
  Migut.G00048.1.p 447 DEKHRFIAEGTCFGSSIRNIIATEGGERKIRHVSVSVWRAFFERFGFEEIELSDSSIYQANLVLKNFAfGDSFTFNFDGKSLIIGWKGTPISS 539
                       ********************************************************************99*********************** PP

              GRAS 370 vSaWr 374
                       +SaW+
  Migut.G00048.1.p 540 LSAWK 544
                       ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.599150523IPR005202Transcription factor GRAS
PfamPF035143.2E-82176544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MLNNIFQTEQ FSTSVASDEY NLEKLAKESG FYEGDQEWGG SESIDMDFFT CGTSLFAQST  60
PHTSSCGDEF KKIIEPGKTG FDRFHSSSSS SFEILNKYGS RCRRFNGENK NLQKYGTEAN  120
EPSTFRLSIE QIIRVASENF IEYSTSQISN EVSILSHPYP SSILCHSKED SQAVELVQNL  180
LLCAEKVNAK QYERAKKILL ECDRMSSPKG TPIQRLVFYF TEALYEKIDG ETGNITRKGL  240
SKKTEDPLEA LKSSEETMIA FHKEVPLSQI TKFAGIQSVV DNIGDAKKIH FIIFEIRKGI  300
QCTILMQALS ENCVEHLKIT SVGTKTSRAS MEKTGTQLTS FSNSLGFRFS FNVVIVDDIS  360
DLDKSQFKIE ENEAIIVYAE FALTNMIGQS DRLEHLMKLI KALNPCVMVV TEVEANCNSP  420
IFVDRFVEAL FFYGASFELM GDCMKNDEKH RFIAEGTCFG SSIRNIIATE GGERKIRHVS  480
VSVWRAFFER FGFEEIELSD SSIYQANLVL KNFAFGDSFT FNFDGKSLII GWKGTPISSL  540
SAWKLKCTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-461735441375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.G00048.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846595.10.0PREDICTED: DELLA protein RGL3-like
TrEMBLA0A022QQU30.0A0A022QQU3_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.G00048.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-53RGA-like 2