PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G00025.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 337aa    MW: 38474.4 Da    PI: 6.3906
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G00025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47.1e-182572148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd  l+++++ +G g+W++ +r+ g++Rt+k+c++rw++yl
  Migut.G00025.1.p 25 RGPWTVEEDFTLINYIAHHGEGRWNSLSRCAGLKRTGKSCRLRWLNYL 72
                      89********************************************97 PP
2Myb_DNA-binding51.22.9e-1678121146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Migut.G00025.1.p  78 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7912072IPR017930Myb domain
SuperFamilySSF466892.12E-3023119IPR009057Homeodomain-like
SMARTSM007177.6E-152474IPR001005SANT/Myb domain
PfamPF002495.0E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-212679IPR009057Homeodomain-like
CDDcd001671.31E-112772No hitNo description
PROSITE profilePS5129423.24673127IPR017930Myb domain
SMARTSM007171.3E-1477125IPR001005SANT/Myb domain
PfamPF002495.8E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2380126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDEKKERRKY GSENEEEILM EDLRRGPWTV EEDFTLINYI AHHGEGRWNS LSRCAGLKRT  60
GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKHAKQL KCDVNSKQFK DTMRYLWMPR LVERIQSQSQ SQATGTPASA ATTYNVVINT  180
HQNADIINLD MGSAQISSVP QPHDVTNIIR GGGGGSLENS SAAVSSDSFG TPVSDMTTDC  240
YNNYVVPLNH DLNQDYYPPA AAAANNNNIN YHHHHQHLSS YNYDDDQSNN LTSPSGYFNQ  300
AGGMDFVDHQ NSQWNMDGGD VSDNIWNVDD MWFLQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241611918120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.G00025.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842595.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A022QWP00.0A0A022QWP0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-86myb domain protein 78