PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01982.1.p
Common NameMIMGU_mgv1a021021mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARF
Protein Properties Length: 575aa    MW: 63942 Da    PI: 6.4314
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01982.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.8e-24130231199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++        +++ +  t+ ++d +g++W++++iyr++++r++lt+GW++Fv+ +++ +gD++vF   +
  Migut.F01982.1.p 130 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILVKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNRKKVVAGDSIVFL--R 218
                       89****************************986545444..8************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++ l+v+++r+
  Migut.F01982.1.p 219 AENGDLCVGIRRA 231
                       488999****997 PP
2Auxin_resp111.96.4e-37301384183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       a++ a ++ +FevvY+P ast+eFvv+v+ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+  dp+rWpnS+Wr+L+
  Migut.F01982.1.p 301 AVNLAVNGRPFEVVYYPLASTPEFVVRVRAVRAAMRVRWCSGMRFKMAFETEDSSRISWfMGTISSVQVDDPIRWPNSPWRLLQ 384
                       6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-29121236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-36124233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-21129230No hitNo description
PfamPF023626.4E-22130231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112130232IPR003340B3 DNA binding domain
SMARTSM010199.8E-23130232IPR003340B3 DNA binding domain
PfamPF065077.6E-32301384IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MINVMHSANK PMNQVEKILD PQLWQACAGG MAQIPPPNSK VYYFPQGHSE HANRHVDFNG  60
FSRIPPIIPC RVSAIKYLAD SDSDEVYAKI RLVPLSMSDY DANDDNNDDN ENGFLGFDKC  120
DEKEKTTNSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LVKDVHGEVW  180
KFRHIYRGTP RRHLLTTGWS NFVNRKKVVA GDSIVFLRAE NGDLCVGIRR AKRGVNGGQE  240
VVCGWSSSNG ASASSLYRGF SDFLSGNRNN VMCDNSKGIG NCELPGVKER GNVSGESVLE  300
AVNLAVNGRP FEVVYYPLAS TPEFVVRVRA VRAAMRVRWC SGMRFKMAFE TEDSSRISWF  360
MGTISSVQVD DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PPGGNLPPFS  420
PPRKRPRFPL PSDFLLPTFF NNPLSPISPL CFLPENIPTG VQGARHARFE SQPSDLVHFK  480
KQIQPFDFKL LDDDDDALSR TKPMFRLFGQ PILSAEQISR SYSVDNNTEG YSLSDGNQEN  540
TGNVSNGSGS GVVQNFPPEA SEDECKKLDL GLET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-761840550388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01982.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834747.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A022RHZ40.0A0A022RHZ4_ERYGU; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]