PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01850.1.p
Common NameMIMGU_mgv1a027130mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 662aa    MW: 72018.3 Da    PI: 6.5776
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-10275331155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Migut.F01850.1.p 275 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 331
                       57*******************4444.2455535555.7799999*************98 PP
2AP246.87.5e-15374425155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Migut.F01850.1.p 374 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 425
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-13275341IPR016177DNA-binding domain
PfamPF008473.3E-8275331IPR001471AP2/ERF domain
CDDcd000186.17E-17275341No hitNo description
SMARTSM003801.1E-19276345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-9276339IPR001471AP2/ERF domain
PROSITE profilePS5103216.133276339IPR001471AP2/ERF domain
PRINTSPR003676.6E-6277288IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17374434IPR016177DNA-binding domain
PfamPF008479.2E-10374425IPR001471AP2/ERF domain
CDDcd000183.78E-25374435No hitNo description
SMARTSM003802.7E-33375439IPR001471AP2/ERF domain
PROSITE profilePS5103219.177375433IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-18375433IPR001471AP2/ERF domain
PRINTSPR003676.6E-6415435IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MDSMNNWLGF SLSHQQQQQQ QQQQDHSQNS VLSDNQTQLG FNSDELLLSA GGGGGGGNSN  60
SDHNQCFDLI TSDDSTTLPP AAAATPFSIF QAFNSNPHHS QDNWNMNSYS CSPHQNQETP  120
KLENFLGVHG GQTHFTDHYH INGGGANRYT PYQEAEPPAA GNNSTMGLSM IKNWLRNNSS  180
NPLPPPTTEA VDNEAAVVVA GGGGAQTLSL SMSTGGGGGS QSSDNNKLHQ SGNSNNNTAA  240
AAAAAAADSC TQSSGGGTVE SVPRKSIETF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR  300
EGQTRKGRQG GYDKEDKAAR AYDLAALKYW GTTTTTNCPI SNYEKEIEEM KHMTRQEFIA  360
SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA  420
IKFRGLNAVT NFEINRYDVK SILESTTLPI GGAAKRLKDA ENAEIALQIQ RAEEANSALT  480
ISNHIYNMNN ISNGVYGGNN NGFQSQSQPL IGMYPYGSNQ RLWCKQEQHD SGFHDIHNQQ  540
QLQLGNYTQN FLQPSSVLHN LMSMDSNSSV EQSSDSNAGV YGNGFTMPMM NPIAEGGFEE  600
SVFGGSSYNQ HARSLYYQQS SSPPPTGVPK NGIYNSASDH NNNGWIPTAV PTTTFTVWNN  660
T*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834521.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ41e-141BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A022RLD10.0A0A022RLD1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-129AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]