PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01818.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 218aa    MW: 23939.4 Da    PI: 4.8178
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01818.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-1957106255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr++  +grWvAeIr+p   + r +r++lg+f t  eAa+a++ a+++l+g
  Migut.F01818.1.p  57 TYRGVRQRT-WGRWVAEIREP---N-RgARVWLGTFSTSLEAAQAYDDAARRLYG 106
                       69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-2656112No hitNo description
PfamPF008472.1E-1357106IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-2057113IPR016177DNA-binding domain
SMARTSM003803.0E-3157120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2857113IPR001471AP2/ERF domain
PROSITE profilePS5103220.99557114IPR001471AP2/ERF domain
PRINTSPR003671.2E-95869IPR001471AP2/ERF domain
PRINTSPR003671.2E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MATHYHQTTV LIPYDDGGGG SSSGNPPPPP KTKPPSVRRS RKGCMRGKGG PENALCTYRG  60
VRQRTWGRWV AEIREPNRGA RVWLGTFSTS LEAAQAYDDA ARRLYGPFAK LNLVTPDSAG  120
GGGGGEGRCE VLPPEAGGFP VVVPDEAEHH QLFNEKNEVS SSVLEEANSI WDIPAAPTLL  180
EETKQDLLNW PEYSLEDSIQ YDYTSNWNDY DQVQWTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1458113662ATERF1
3gcc_A1e-1458113662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01818.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834526.11e-161PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A022RIE88e-77A0A022RIE8_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-39ERF family protein