PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.F01796.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 165aa MW: 17706.7 Da PI: 6.5351

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F01796.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.2	1.3e-54	26	121	1	96
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdrflPian++rimkk+lP+n+ki+kdak+tvqecvsefi+f+tseas+kcq+ekrktingddll+a+atlGfedy++plkvyl++yrel Migut.F01796.1.p 26 VREQDRFLPIANIGRIMKKALPTNGKIGKDAKDTVQECVSEFIGFITSEASNKCQKEKRKTINGDDLLYAIATLGFEDYIAPLKVYLARYREL 118 69******************************************************************************************* PP NF-YB 94 ege 96 eg+ Migut.F01796.1.p 119 EGD 121 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.8E-50	24	143	IPR009072	Histone-fold
SuperFamily	SSF47113	3.42E-38	29	141	IPR009072	Histone-fold
Pfam	PF00808	1.2E-25	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.7E-18	60	78	No hit	No description
PRINTS	PR00615	2.7E-18	79	97	No hit	No description
PRINTS	PR00615	2.7E-18	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MADSPGGDGS HEGGGGGGDR SPRLGVREQD RFLPIANIGR IMKKALPTNG KIGKDAKDTV 60 QECVSEFIGF ITSEASNKCQ KEKRKTINGD DLLYAIATLG FEDYIAPLKV YLARYRELEG 120 DIKGPGKGAD GSSKKETRQV SDSQFVHQGS VSQGFSYSNP EIEY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-45	26	117	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-45	26	117	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F01796.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834891.1	1e-117	PREDICTED: nuclear transcription factor Y subunit B-1-like
Refseq	XP_012834892.1	1e-117	PREDICTED: nuclear transcription factor Y subunit B-1-like
Swissprot	Q8VYK4	1e-70	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0N6X6V5	3e-88	A0A0N6X6V5_SALMI; Transcription factor NFYB
STRING	Migut.F01796.1.p	1e-117	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	1e-67	nuclear factor Y, subunit B10

Link Out ? help Back to Top
Phytozome	Migut.F01796.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]