PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F01752.1.p | ||||||||
Common Name | MIMGU_mgv1a020932mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 565aa MW: 62361.1 Da PI: 5.4035 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.9 | 3.7e-13 | 137 | 185 | 49 | 99 |
EE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 49 kliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++iyr++++r++lt+GW++Fv+ ++L +gD+vvF + +++el+++v+r+ Migut.F01752.1.p 137 RHIYRGTPRRHLLTTGWSNFVSRKRLVAGDSVVFL--RAENGELCIGVRRA 185 7899*******************************..449999*****996 PP | |||||||
2 | Auxin_resp | 112.3 | 4.8e-37 | 220 | 303 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ as + +FevvY+Prast+eFvv+++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+ dp+rWpnS+Wr+L+ Migut.F01752.1.p 220 AVDLASCGRPFEVVYYPRASTPEFVVRASVVRDAMRVRWCGGMRFKMAFETEDSSRISWfMGTISSVRVDDPIRWPNSPWRLLQ 303 56788999**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-14 | 109 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.59E-11 | 117 | 184 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-14 | 137 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-10 | 137 | 185 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.291 | 146 | 186 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.9E-32 | 220 | 303 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MINVMHSVVN QLEKSLNPQL WHACAGGMAQ TPPLNSGVYY FPQGHAEHAA GNLDSGEFSK 60 IPPLVLCRVL SVKYLADAES DEVFAKIKLV PLGANDEFDS NFDKSGVNEV SISKSNSFAK 120 TLTQSDANNG GGFSVPRHIY RGTPRRHLLT TGWSNFVSRK RLVAGDSVVF LRAENGELCI 180 GVRRAKTGLG VGAEVAAYGW NSGGRDFLGV GERGESVIEA VDLASCGRPF EVVYYPRAST 240 PEFVVRASVV RDAMRVRWCG GMRFKMAFET EDSSRISWFM GTISSVRVDD PIRWPNSPWR 300 LLQVAWDEPD LLQNVKRVSP WLVELVSNIP AIHLSPLSVP RKRPRLPELS GYPVSMPTFF 360 SNNPLSPLCC FSDNNISYSG IQGARHARIL LPSSNFHYNK PQPFDFKPLV DYTSPSQKTE 420 NFEESNEAKK SPLFLLFGQP ILTEEQIIAS NLSDENRENV GDVSNGSVSG VIQNFPLEAS 480 SDGEFSRFEE QKLELGVETT HCKVFTEPED VGRTLDLSIL TSYEELYGKS ESVFCMERSE 540 TSNNVVCSDS SGTTKHTGDE CRVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 9e-62 | 16 | 324 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F01752.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076975.1 | 0.0 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A022RHG8 | 0.0 | A0A022RHG8_ERYGU; Auxin response factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F01752.1.p |
Publications ? help Back to Top | |||
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