PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.F01751.2.p

Common Name

LOC105955700, MIMGU_mgv1a010405mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

GATA

Protein Properties

Length: 314aa MW: 34562.3 Da PI: 5.4171

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F01751.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.7	3.2e-18	237	270	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Migut.F01751.2.p 237 CKHCEITKTPQWRAGPTGPKTLCNACGVRYKSGR 270 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	6.3E-72	1	310	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	11.53	231	267	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.7E-17	231	281	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.7E-15	235	268	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.38E-14	235	294	No hit	No description
CDD	cd00202	1.86E-14	236	283	No hit	No description
Pfam	PF00320	6.6E-16	237	270	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	237	262	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEPNFMDEID CGNFFDQIDD LIEFPPDNED VGGIFVNSDS SKDFPSMWND DALPESDHLF 60 SANAASDLSA ELSVPYEDIV QLEWLSTFVE DSFSGGGMTI AAKENLREHK NEPTSHTTYQ 120 FQTSSPVSVL ESTSSSSSTT SVGQTTAHLP PTHRGPQRAR SKRPRPSTFN PRPTTIPSFV 180 DTTPQFSSET EIFVEEAPPL ATNKIPKRKK MKKTPPSNRE DDDNEGGAHG DPPVRKCKHC 240 EITKTPQWRA GPTGPKTLCN ACGVRYKSGR LFPEYRPAAS PTFVPALHSN SHKKVVEMRT 300 KVGPAKPEFD ASF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	165	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F01751.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	6e-32	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834937.1	0.0	PREDICTED: GATA transcription factor 8-like
TrEMBL	A0A022RJB2	0.0	A0A022RJB2_ERYGU; GATA transcription factor
STRING	Migut.F01751.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	2e-40	GATA family protein

Link Out ? help Back to Top
Phytozome	Migut.F01751.2.p
Entrez Gene	105955700