PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F01688.1.p | ||||||||
Common Name | LOC105963462, MIMGU_mgv1a007979mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 43816.3 Da PI: 4.987 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.8 | 1.8e-52 | 27 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l+pGfrFhPtdeelv +yL++kv gk++++ e+++e+d+yk+ePw+L ++v++++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++ Migut.F01688.1.p 27 LAPGFRFHPTDEELVRYYLRRKVCGKPFRF-EAVTEIDVYKSEPWELAdySSVNTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRS 118 579**************************9.89**************84347777888*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v + k+e++g+kktLvf++grap+g++t+Wvmheyrl Migut.F01688.1.p 119 VRH-KNETIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 154 ***.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-61 | 24 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.072 | 27 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-28 | 29 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEMGQELVVA PAAATAAVKG APPPTSLAPG FRFHPTDEEL VRYYLRRKVC GKPFRFEAVT 60 EIDVYKSEPW ELADYSSVNT RDLEWYFFSP VDRKYGNGSR LNRATGKGYW KATGKDRSVR 120 HKNETIGMKK TLVFHSGRAP DGKRTNWVMH EYRLCDAELE TAGIPQDAFV LCRIFQKSGL 180 GPPNGDRYAP FVEEEWGEDA ALVISGEEAE DDVANADEPR VECTDLDQDT PPLSIALPQI 240 ESEILPFTCK RELVDPTPLS LSKSNKRSKH EDPNSTKPNG SEDSTTTSLP EPSMMMTKNT 300 SSGTLLEFPL LQPRCSSKET TFDSSNLEKS VPPGYLKFIN NLENEILNVS MEKDLLKIEV 360 MRAQAMISHF QSRIETLTEE NESFKRRFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-51 | 26 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-51 | 26 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-51 | 26 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-51 | 26 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-51 | 26 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-51 | 26 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-51 | 26 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-51 | 26 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-51 | 26 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-51 | 26 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-51 | 26 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-51 | 26 | 177 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-51 | 26 | 177 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-51 | 26 | 177 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F01688.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182578 | 0.0 | AC182578.2 Erythranthe guttata clone MGBa-9K21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843322.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
Swissprot | Q9SQX9 | 1e-106 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | A0A022R104 | 0.0 | A0A022R104_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01688.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3140 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 4e-96 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F01688.1.p |
Entrez Gene | 105963462 |
Publications ? help Back to Top | |||
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