PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01593.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 215aa    MW: 24288 Da    PI: 6.8669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01593.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-102167347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +WT eEd+++ +a  + + g   +W++Ia+ ++  ++++++k+++ ++
  Migut.F01593.1.p 21 SWTREEDKIFERALVEIPDGvndRWRRIAHFLP-AKSPEEVKDHYDDL 67
                      6********************************.**********9665 PP

2Myb_DNA-binding50.64.4e-16122166347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT++E+ l++++ +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Migut.F01593.1.p 122 PWTEDEHRLFLEGLHKYGKGDWRSISRNVVVTRTPTQVASHAQKY 166
                       8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.4E-81870IPR001005SANT/Myb domain
PfamPF002493.8E-92167IPR001005SANT/Myb domain
CDDcd001671.94E-92168No hitNo description
PROSITE profilePS500908.132168IPR017877Myb-like domain
SuperFamilySSF466894.97E-122176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-72169IPR009057Homeodomain-like
PROSITE profilePS5129419.847115171IPR017930Myb domain
SuperFamilySSF466894.42E-17117171IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-18118170IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.0E-12119165IPR009057Homeodomain-like
SMARTSM007172.0E-13119169IPR001005SANT/Myb domain
PfamPF002493.0E-14122166IPR001005SANT/Myb domain
CDDcd001675.09E-12122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MKFYPSMYSI DANYAAAAAP SWTREEDKIF ERALVEIPDG VNDRWRRIAH FLPAKSPEEV  60
KDHYDDLLDD IHRIDSGLVE LPCYSDDSAS LGSGMPGQIS FGSPSSGNRS RHSEVDRKKG  120
TPWTEDEHRL FLEGLHKYGK GDWRSISRNV VVTRTPTQVA SHAQKYFLRQ NSGKKERKRS  180
SIHDITTVTD TLTVPVAPNL HNQDGFQDFG FHMP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01593.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837738.11e-160PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN63e-58SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A022RE901e-133A0A022RE90_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-68MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]