PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F01593.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24288 Da PI: 6.8669 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.2 | 2.5e-10 | 21 | 67 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT eEd+++ +a + + g +W++Ia+ ++ ++++++k+++ ++ Migut.F01593.1.p 21 SWTREEDKIFERALVEIPDGvndRWRRIAHFLP-AKSPEEVKDHYDDL 67 6********************************.**********9665 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.4e-16 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++++ +++G+g+W++I+r + +Rt+ q+ s+ qky Migut.F01593.1.p 122 PWTEDEHRLFLEGLHKYGKGDWRSISRNVVVTRTPTQVASHAQKY 166 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.4E-8 | 18 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-9 | 21 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-9 | 21 | 68 | No hit | No description |
PROSITE profile | PS50090 | 8.13 | 21 | 68 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.97E-12 | 21 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-7 | 21 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.847 | 115 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.42E-17 | 117 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-18 | 118 | 170 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.0E-12 | 119 | 165 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 119 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 122 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.09E-12 | 122 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MKFYPSMYSI DANYAAAAAP SWTREEDKIF ERALVEIPDG VNDRWRRIAH FLPAKSPEEV 60 KDHYDDLLDD IHRIDSGLVE LPCYSDDSAS LGSGMPGQIS FGSPSSGNRS RHSEVDRKKG 120 TPWTEDEHRL FLEGLHKYGK GDWRSISRNV VVTRTPTQVA SHAQKYFLRQ NSGKKERKRS 180 SIHDITTVTD TLTVPVAPNL HNQDGFQDFG FHMP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F01593.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837738.1 | 1e-160 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 3e-58 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A022RE90 | 1e-133 | A0A022RE90_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-68 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.F01593.1.p |
Publications ? help Back to Top | |||
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