PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01157.1.p
Common NameMIMGU_mgv1a013890mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24940.6 Da    PI: 9.7815
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01157.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.26.1e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien + rqvtfskRrngi+KKA+ELSvLCdaeva+i+fs++g+ly +ss
  Migut.F01157.1.p  9 KRIENATSRQVTFSKRRNGIFKKAYELSVLCDAEVALILFSQKGRLYQFSS 59
                      79***********************************************96 PP
2K-box73.84.9e-2581171999
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++++++lq e+a + ++ie L+++qR+llG +L  +s++eLq++ +qLe+s+++iR+kK++l++e+ie+l+ kek l een +L++k++
  Migut.F01157.1.p  81 EVQQHTQHLQYEAAIMASKIELLENSQRKLLGHNLVVCSIEELQEIDNQLERSINNIRAKKSQLFKEEIEKLRVKEKILLEENARLSEKFQ 171
                       567889**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.198161IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30323IPR002100Transcription factor, MADS-box
CDDcd002651.21E-40371No hitNo description
SuperFamilySSF554551.7E-32390IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.4E-2482170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.01986178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVRGKVEMKR IENATSRQVT FSKRRNGIFK KAYELSVLCD AEVALILFSQ KGRLYQFSSS  60
DMQKTIEKYL QRAKDDNRST EVQQHTQHLQ YEAAIMASKI ELLENSQRKL LGHNLVVCSI  120
EELQEIDNQL ERSINNIRAK KSQLFKEEIE KLRVKEKILL EENARLSEKF QFGFRPKNTA  180
QKQKEITIES HSTTAMESEV VTELFIGLPT SRNAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-20169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-20169169Myocyte-specific enhancer factor 2B
1tqe_R1e-20169169Myocyte-specific enhancer factor 2B
1tqe_S1e-20169169Myocyte-specific enhancer factor 2B
5f28_A1e-20169169MEF2C
5f28_B1e-20169169MEF2C
5f28_C1e-20169169MEF2C
5f28_D1e-20169169MEF2C
6c9l_A1e-20169169Myocyte-specific enhancer factor 2B
6c9l_B1e-20169169Myocyte-specific enhancer factor 2B
6c9l_C1e-20169169Myocyte-specific enhancer factor 2B
6c9l_D1e-20169169Myocyte-specific enhancer factor 2B
6c9l_E1e-20169169Myocyte-specific enhancer factor 2B
6c9l_F1e-20169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01157.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858650.11e-156PREDICTED: MADS-box protein SOC1-like
SwissprotQ9FIS12e-79AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A022PUQ01e-143A0A022PUQ0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.39e-82AGAMOUS-like 42