PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F01137.1.p | ||||||||
Common Name | MIMGU_mgv1a001368mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 863aa MW: 99707.1 Da PI: 6.3925 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.9 | 2.7e-26 | 69 | 155 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+ vGFs+rk+ ++sk +g++++r+f+Cs++g+r+++k++ ++ +++r+etrtgC a+++v+++ d k+ vt++e+ HnHe Migut.F01137.1.p 69 RFYNKYAELVGFSIRKDWVNRSKVHGRVMSRKFTCSRQGHRKKDKRD-VNVKKHRKETRTGCMAHMVVTRQADRKYIVTQFEEGHNHE 155 5*******************************************999.999************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-23 | 69 | 155 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.6E-20 | 282 | 373 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.483 | 562 | 598 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.4E-4 | 571 | 597 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.3E-5 | 573 | 600 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 863 aa Download sequence Send to blast |
MDMNGNEVVM THEEHVGVRM SNNLDLNLEQ ECRSPKSSNM NGAHQSSRSS ENEVLKIGTE 60 FESDEQAYRF YNKYAELVGF SIRKDWVNRS KVHGRVMSRK FTCSRQGHRK KDKRDVNVKK 120 HRKETRTGCM AHMVVTRQAD RKYIVTQFEE GHNHEDVNLT KAEKLLESPL SGKRDSTEVS 180 ETDSIKNSEI QSKLSFQLLG IRFCPPENFD DLEINDEIFL SSSRTRDMKE GDAASLMYYF 240 HRQHFLNPSF FYSVQLDADD KVSNIFWADD NMIMEYGHFG DVICLDTSCT RNPNSRPFVQ 300 FIGLNNHRQV VLFGAAFLYD DTVNSFKWLF RTFVEAMAGK KPKFILSDQD ATVVQAIHAV 360 LPETNHYICA WQMYLIALKH LRHVVKEFDS FAVDFRSCIF GHEQEEDFIN AWDSMLESHG 420 LRHNAWLRWM FREKEKWAVA YGRNTFFIER DGTHLVELFS DKLRSYLDPD TEMLQFFKHF 480 ESVVNEQRYK ELESTFNMGR HVPVLMANAV FLKYPSETYT PKAFEVFQRE YEKCLNVVIN 540 KCGERDTRSD YKAKTYGKSR DFSVMYNSLD GTVSCNCMKF EHAGFLCSHA LKVLDHQNIK 600 VVPSYYVLKR WTKDARILPV GESHCSTEND NKKVLATRYK DLCRSIIKIS ARAAESDTAF 660 DFATRKLDEV MQGIERILNF KSFEEDKAFC ASDNELPDVD LGRNEFDDQD IEVLKGTAET 720 ECIIPDKDQL NHCDPSPPET VLSVACPPSA YISSPSPPPS MSPLTQGLYT IDANHMVQSI 780 YQGPNLIINQ QPNSNMYEPQ NFYSSQNHSP SHAQFMQESL IRNQFQDPMS NGTQLKPVMD 840 DDQHPHSSSF MHYNHRYRAA GV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F01137.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858488.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A022PT46 | 0.0 | A0A022PT46_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01137.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-95 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F01137.1.p |