PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01094.1.p
Common NameLOC105977912, MIMGU_mgv1a025099mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 617aa    MW: 67381.1 Da    PI: 7.3306
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.14.9e-1122476163374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +  +++A a+s+g++e a ++L+rl+  a+p+g++ qR++ay++ AL++r++     + + lp+se +    +e++ +++++++vsP++k+++
  Migut.F01094.1.p 247 QSFVDAAAAISDGNMESAAEILTRLQRVANPRGTSEQRVTAYMVSALKSRMNP----TEHPLPVSELH---GKEHTVSTQMLYDVSPCFKLGF 332
                       67899***********************************************9....88888999998...999******************* PP

              GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                       ++aN aIlea++++  +r+H++Dfdi++G+Q++ +l+aLa+++   + ++ l+iT++++p sg++e+l+ +gerL+ +A++++v f+f++   
  Migut.F01094.1.p 333 MAANLAILEAASEQglHRIHVVDFDIGHGGQYMHFLHALAAKKpddRRAAVLKITALADPVSGDEEKLKIVGERLKALADKIDVCFKFSI-KN 424
                       ************9999************************7766766788***************************************9.88 PP

              GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        +++ l+ eeL v+p EalaVn++++lh+l+desv++e+ rde+L+ vk+lsP+v++vveq+++ n++++  r+ e++e+y+alfdslea++p
  Migut.F01094.1.p 425 LNFDGLNREELGVEPAEALAVNFAFRLHKLPDESVTTENFRDEMLRRVKRLSPTVMTVVEQDINANTAPLTVRVRETCEHYAALFDSLEATVP 517
                       8******************************************************************************************** PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpL 367
                       re+ +r+ vE++ lgr+  n va eg++r+er+e ++kWr+r+++aGF+pvp+s+ +a++ ++ l+     + g++v+eesg +++gW++r++
  Migut.F01094.1.p 518 RENPNRVRVEEA-LGRKMGNSVAWEGRDRVERCEVFGKWRARMSMAGFQPVPMSQPVAESLRAKLNSGTrgNPGFTVNEESGGICFGWMGRTI 609
                       ************.**********************************************999999875546899******************* PP

              GRAS 368 vsvSaWr 374
                        ++SaWr
  Migut.F01094.1.p 610 AVASAWR 616
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.507219594IPR005202Transcription factor GRAS
PfamPF035141.7E-109247616IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MSSGFSGGVP DFFTGGGRST SRNSGFNSNL NAEQQFPFPP PLPGIMLEPA GQIRRPNFIG  60
KRSLADFQQQ SQQGLGFYLR NVKLRPNYQH ASVPSISPEV SPISNSMNSR YGIPIVQQHR  120
LQQLTLPNRN VNKLCTSFFS PNLAGNDGNF NTGIGLPGSG SGSGSDVFGY EAEKKMMSHR  180
LQELEKELLG DDDDGEAASV VTSSEWSETI QNLISPCNQK SISLSPSSSS SSCCSTSASP  240
PIPCTRQSFV DAAAAISDGN MESAAEILTR LQRVANPRGT SEQRVTAYMV SALKSRMNPT  300
EHPLPVSELH GKEHTVSTQM LYDVSPCFKL GFMAANLAIL EAASEQGLHR IHVVDFDIGH  360
GGQYMHFLHA LAAKKPDDRR AAVLKITALA DPVSGDEEKL KIVGERLKAL ADKIDVCFKF  420
SIKNLNFDGL NREELGVEPA EALAVNFAFR LHKLPDESVT TENFRDEMLR RVKRLSPTVM  480
TVVEQDINAN TAPLTVRVRE TCEHYAALFD SLEATVPREN PNRVRVEEAL GRKMGNSVAW  540
EGRDRVERCE VFGKWRARMS MAGFQPVPMS QPVAESLRAK LNSGTRGNPG FTVNEESGGI  600
CFGWMGRTIA VASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-3725361526377Protein SCARECROW
5b3h_D8e-3725361526377Protein SCARECROW
5hyz_A5e-3725461614375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01094.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858763.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A022PT830.0A0A022PT83_ERYGU; Uncharacterized protein
STRINGMigut.F01094.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-134SCARECROW-like 8