PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.F00757.1.p | ||||||||
Common Name | LOC105977524, MIMGU_mgv1a022039mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 22135.8 Da PI: 4.4961 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.9 | 2e-39 | 7 | 108 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrr+C+++C++apyf+ eq +++fa+vh++FGasnv+kll++lp + r+da+ ++ yeA ar+++PvyG+v++i +lqqq+++l++ Migut.F00757.1.p 7 SCGACKFLRRRCTNECIFAPYFCYEQaANHFAAVHRIFGASNVSKLLSHLPVHSRNDAAITISYEALARIQEPVYGCVAHIYSLQQQVASLEE 99 6***********************9978***************************************************************** PP DUF260 93 elallkeel 101 e++ l++++ Migut.F00757.1.p 100 EIEILGNQI 108 ***998875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.008 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.2E-37 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MTGVSSSCGA CKFLRRRCTN ECIFAPYFCY EQAANHFAAV HRIFGASNVS KLLSHLPVHS 60 RNDAAITISY EALARIQEPV YGCVAHIYSL QQQVASLEEE IEILGNQIAN IGVNIAPYET 120 SNPYFAAQSE IGSNCSNQQS LPILHPEASG SFCHAGLQTV DEVSEGFLNS SIFEMLLEEL 180 NQDYYLLEEL SQDYYYMHS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-34 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-34 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.F00757.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858285.1 | 1e-145 | PREDICTED: LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 2e-53 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A022PYK8 | 1e-144 | A0A022PYK8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F00757.1.p | 1e-145 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06080.1 | 7e-56 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.F00757.1.p |
Entrez Gene | 105977524 |
Publications ? help Back to Top | |||
---|---|---|---|
|