PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00707.2.p | ||||||||
Common Name | LOC105977549, MIMGU_mgv1a013156mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 26199.4 Da PI: 7.9254 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 21 | 65 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 rWT+eE +++ a +++ + +W ++a+ ++ g++ +++ + + Migut.F00707.2.p 21 TRWTKEENKRFESALAMFDENtpnRWCRVAELIP-GKSVYDVMNQY 65 59*****************99*************.*******9987 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3e-13 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W++I+r + +t+ q+ s+ qky Migut.F00707.2.p 121 PWTEDEHRRFLLGLQKHGKGDWRSISRNFVISKTPTQVASHAQKY 165 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.703 | 18 | 73 | IPR017884 | SANT domain |
SMART | SM00717 | 9.6E-9 | 19 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-4 | 21 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-11 | 21 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-6 | 21 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-6 | 22 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-11 | 111 | 171 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.307 | 114 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.64E-16 | 115 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-18 | 117 | 169 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-10 | 118 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.22E-9 | 121 | 165 | No hit | No description |
Pfam | PF00249 | 1.9E-11 | 121 | 165 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
METLCHNSYT PESCWPINGT TRWTKEENKR FESALAMFDE NTPNRWCRVA ELIPGKSVYD 60 VMNQYDELVS DVSDIEAGLV PIPGYLASSF TLELSDHRSF DMYRKRSGIR TCDQERKKGV 120 PWTEDEHRRF LLGLQKHGKG DWRSISRNFV ISKTPTQVAS HAQKYYLRQQ ISGGKDKRRP 180 SIHDITTDNI ADATNVVVVS PSETKKTPPL SEKSNHSLHP CWTGIIVDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-15 | 23 | 98 | 11 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00707.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858321.1 | 1e-173 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_012858322.1 | 1e-173 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-82 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A022Q0F3 | 1e-172 | A0A022Q0F3_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-81 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00707.2.p |
Entrez Gene | 105977549 |
Publications ? help Back to Top | |||
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