PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00701.1.p | ||||||||
Common Name | LOC105977363, MIMGU_mgv1a013900mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | WOX | ||||||||
Protein Properties | Length: 208aa MW: 22995.6 Da PI: 7.9155 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.7 | 6.1e-21 | 28 | 89 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L elF++ r+ps++++++++++l +++ ++V++WFqN++a+e++ Migut.F00701.1.p 28 KCGRWNPTSEQVKVLTELFRSgLRTPSTDQIQKISSQLsfygKIESKNVFYWFQNHKARERQ 89 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.1 | 6.8e-37 | 28 | 91 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt+eQ+k+L+el++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ Migut.F00701.1.p 28 KCGRWNPTSEQVKVLTELFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKR 91 678***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.143 | 25 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-11 | 26 | 94 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.2E-4 | 27 | 94 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.4E-18 | 29 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-5 | 31 | 91 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 31 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010078 | Biological Process | maintenance of root meristem identity | ||||
GO:1902459 | Biological Process | positive regulation of stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEDQYSAGFC IRASRGGGCG GGGGGGTKCG RWNPTSEQVK VLTELFRSGL RTPSTDQIQK 60 ISSQLSFYGK IESKNVFYWF QNHKARERQK RRRVLVSTPA ADDDIINIHH HHLQTTTTTN 120 TKLAAVSSTE RNYYGDEGVI NYEVSEGGRV IETLQLFPVK CLIGEAADNN IGNCRENASF 180 ITYGHNNNIN GATEMDHPTL DLRLSFF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 93 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00701.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858118.1 | 1e-155 | PREDICTED: WUSCHEL-related homeobox 5 | ||||
TrEMBL | A0A022PW26 | 1e-154 | A0A022PW26_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12201 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11260.1 | 1e-45 | WUSCHEL related homeobox 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00701.1.p |
Entrez Gene | 105977363 |