PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00585.1.p | ||||||||
Common Name | LOC105977466, MIMGU_mgv1a020273mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 25897.2 Da PI: 7.9797 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.3 | 3.9e-41 | 53 | 153 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lq+q+e l+ae Migut.F00585.1.p 53 PCAACKLLRRRCAQECPFSPYFSPHEPHKFDAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIEFLHAE 145 7******************************************************************************************** PP DUF260 94 lallkeel 101 l+++++e+ Migut.F00585.1.p 146 LNAVRNEI 153 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.85 | 52 | 153 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-40 | 53 | 150 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSTERERFDE EIAKKIKRES DNAFPHHHQN IMGGGGRRHI SAAAAGTLNT VTPCAACKLL 60 RRRCAQECPF SPYFSPHEPH KFDAVHKVFG ASNVSKMLLE VHESQRADAA NSLVYEANVR 120 LRDPVYGCMG AISALQHQIE FLHAELNAVR NEILKYKQYN TTETNTLLHS SSSSSHITLH 180 PSGAVSIAAP PPPTPPPPPP SLPIRPLLSS SPMYNPVTSS SSGAAGGDFS TENITYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-40 | 43 | 156 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-40 | 43 | 156 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00585.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858226.1 | 1e-177 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 2e-76 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A022PX63 | 1e-176 | A0A022PX63_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F00585.1.p | 1e-176 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-77 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00585.1.p |
Entrez Gene | 105977466 |
Publications ? help Back to Top | |||
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