PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00531.1.p
Common NameLOC105977449, MIMGU_mgv1a009871mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 329aa    MW: 34782.2 Da    PI: 10.0707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00531.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-11105150247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++W++eE+  ++ + ++lG+g+Wk Ia++    R   q+ s+ qky
  Migut.F00531.1.p 105 KPWSEEEHRSFLLGLEKLGKGDWKGIASKYVPSRKSSQVASHAQKY 150
                       58*************************998889************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.763722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129414.19999155IPR017930Myb domain
SuperFamilySSF466893.04E-13101154IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-15102154IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.5E-9103150IPR009057Homeodomain-like
SMARTSM007171.0E-8103153IPR001005SANT/Myb domain
PfamPF002494.5E-9105150IPR001005SANT/Myb domain
CDDcd001679.55E-9106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPNQCARKCC HCGQKGHNSR TCTIKACVGF KLFGVQIDVP AGDDGGGGGG AAAASSTIRK  60
SKSLGNLEAC NPEGGGGAAA LEDSGYLSDG LIHQSSKSLD RKKGKPWSEE EHRSFLLGLE  120
KLGKGDWKGI ASKYVPSRKS SQVASHAQKY FIRKAGIEKR RRRTSVFDIP LTDSNQSSSQ  180
VIPGSQPDKA AVESSQPAAA VVASSSSKNM AEPNGQATNK QPLPAHVATS ERPPLSPMKT  240
HGFVDFRGTF YKPYWVPVVN FPSQNSSGVF IPNMHGALSA CTAFVPQQHS AAAWRQPLGQ  300
PSFSQAGSAA PIPNNDELNL NIRKLALQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00531.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858213.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ9FKF94e-47M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A022PWJ40.0A0A022PWJ4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-49MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]