PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00528.1.p | ||||||||
Common Name | LOC105977756, MIMGU_mgv1a018364mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26627 Da PI: 5.8982 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.1e-20 | 103 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ taeeAa a+++a+ +++g Migut.F00528.1.p 103 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAALAYDRAAFRMRG 153 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-32 | 102 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-23 | 103 | 163 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-38 | 103 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.408 | 103 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.78E-32 | 103 | 162 | No hit | No description |
Pfam | PF00847 | 6.5E-15 | 103 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MYQPNYSELT PVDLPAVYCR SYSFSSLMPC LTETWGDLPL KVDDSEDMVI YGLLRDAVTD 60 GWTPFNDVKT EPRDMGLAAA VRTEYVVVSP PATAAAARPK GRHYRGVRQR PWGKFAAEIR 120 DPAKNGARVW LGTYETAEEA ALAYDRAAFR MRGSKALLNF PHKIGLNEPE PVRITAKRRS 180 PETSGSTVSA LTSGSDSGSS PKRVKREETA DGAELEVDSQ STFGYQVECQ MTSLPLGAQL 240 VVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-37 | 100 | 168 | 2 | 70 | ATERF1 |
3gcc_A | 1e-37 | 100 | 168 | 2 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00528.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858578.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q40479 | 1e-106 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A022PXA9 | 1e-179 | A0A022PXA9_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4054 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-52 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00528.1.p |
Entrez Gene | 105977756 |
Publications ? help Back to Top | |||
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