PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00465.1.p
Common NameMIMGU_mgv1a020345mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 353aa    MW: 41236 Da    PI: 6.7431
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00465.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.83.6e-5671361129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeelv++yL++k+++++++l +vik+vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  Migut.F00465.1.p   7 VPPGFRFHPTDEELVDYYLRRKINSRPIDL-DVIKDVDLYKIEPWDLQElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDK 98 
                       69****************************.9***************954555442556********************************** PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Migut.F00465.1.p  99 AIYS-KNDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                       ****.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-625156IPR003441NAC domain
PROSITE profilePS5100560.7197156IPR003441NAC domain
PfamPF023656.4E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRRKIN SRPIDLDVIK DVDLYKIEPW DLQELCRIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSKNDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKRIAT MRRINEHDSP IWYEDQVSFM  180
PDHRIDSPNL SYHHHHNNIP YNNNNNSCKK KEMDLHLYGI NNNGMPPPHH FLDHHHLPHL  240
DESPKMPFYG GLNNLNPGDQ EQMVMHQTLL DHNHRNIDQS IILSEDQVTD WRVLDKFVAS  300
QLSHEEISKG INTFHASDEE LSNVIGRNRN KGEIALANTS ASSSSCQNEM WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-49716217171NO APICAL MERISTEM PROTEIN
1ut4_B2e-49716217171NO APICAL MERISTEM PROTEIN
1ut7_A2e-49716217171NO APICAL MERISTEM PROTEIN
1ut7_B2e-49716217171NO APICAL MERISTEM PROTEIN
4dul_A2e-49716217171NAC domain-containing protein 19
4dul_B2e-49716217171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00465.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852103.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-131NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A022QCL20.0A0A022QCL2_ERYGU; Uncharacterized protein
STRINGMigut.F00465.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-116NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]