PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00344.1.p
Common NameMIMGU_mgv1a019275mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 291aa    MW: 32976.9 Da    PI: 6.6444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00344.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-141562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W+++Ed +l +++  +G g+W+++++  g++R +k+c++rw +yl
  Migut.F00344.1.p 15 KGLWSPDEDHKLRNYILNYGHGCWSSVPNNAGLKRNGKSCRLRWINYL 62
                      678*******************************************97 PP
2Myb_DNA-binding54.33e-1768113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ eE++ ++ +++ lG++ W+ Ia++++ gRt++++k++w++yl
  Migut.F00344.1.p  68 RGAFSLEEEDTILTLHQILGNK-WSHIAHHLP-GRTDNEIKNHWHSYL 113
                       89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-22965IPR009057Homeodomain-like
PROSITE profilePS5129416.4881062IPR017930Myb domain
SuperFamilySSF466899.36E-2913109IPR009057Homeodomain-like
SMARTSM007173.4E-101464IPR001005SANT/Myb domain
PfamPF002493.6E-131562IPR001005SANT/Myb domain
CDDcd001677.95E-81862No hitNo description
PROSITE profilePS5129426.58863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2566117IPR009057Homeodomain-like
SMARTSM007175.4E-1667115IPR001005SANT/Myb domain
PfamPF002497.3E-1668113IPR001005SANT/Myb domain
CDDcd001673.10E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGCDKWGEAK QKHKKGLWSP DEDHKLRNYI LNYGHGCWSS VPNNAGLKRN GKSCRLRWIN  60
YLRPGLKRGA FSLEEEDTIL TLHQILGNKW SHIAHHLPGR TDNEIKNHWH SYLKKKVPKT  120
PLVDTQYGGY KTECMSGKIM QQELLQLSPS SHKSRNIPQN SSFESLENIE TDTDQSMQND  180
QKDHSNIGAG QRCNLPKVMF AEWMFSDKFL PESSGSSNTT TAADFKYPII GSNNSEDSSL  240
VDSLLLDEGV FENQLHTKSN NIISMEDMLQ SSLGFDFPGE FNLSCDDMYI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24151177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00344.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851916.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A022QCU80.0A0A022QCU8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.16e-57myb domain protein 18