PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00310.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 554aa    MW: 60693.1 Da    PI: 7.3265
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS89.94.2e-282673882126
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       +++L++ A a+s+ + e+a ++L+rl++  + +g+p qRl++y++ AL++r+       ++  +p + +    +e++a+++++++vsP++k++
  Migut.F00310.1.p 267 KQALIDTAAAISEAKPEAAVEILTRLQQSGNARGTPEQRLTSYMVSALKSRVGP-----AENQQPISPEIIYGKEHTASTQMLYDVSPCFKLG 354
                       589**************************************************9.....333333333334499******************* PP

              GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWp 126
                       +++aN aIlea+ ++  +++H++Dfdi+qG+Q++
  Migut.F00310.1.p 355 FMAANLAILEATWEQgfDKIHVLDFDIGQGGQYL 388
                       ***********987777***************96 PP
2GRAS164.31e-50388553210374
              GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                       l++l+desv++e+ rde+L+ vkslsP+v++vveqe+++n++++ +r+ +a eyy alfdsl+a+++re+ +r+ +E+  l+r+i+n va eg
  Migut.F00310.1.p 388 LYKLPDESVTTENLRDELLRRVKSLSPEVMTVVEQEMNTNTAPLTARVRDAYEYYGALFDSLDATVSRENPDRVRIEEG-LSRKISNSVAGEG 479
                       6899***************************************************************************.************* PP

              GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       ++r+er+e l+kWr+r+++aGF+p ++s+ a+++ ++ l+     + g++v+eesg +++gW++r L+++SaWr
  Migut.F00310.1.p 480 RDRVERCEVLGKWRARMSMAGFQPRKMSQLAVESLRSKLNSGTrgNPGFSVNEESGGICFGWMGRILTVASAWR 553
                       ************************************999876556899*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.639240387IPR005202Transcription factor GRAS
PROSITE profilePS5098515.63388531IPR005202Transcription factor GRAS
PfamPF035143.5E-48388553IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MSSGYSGGVP DFFSAGRRST AMSTNMNNNY NSSLNAQQQF AFRSPVSGIP PDPAAQIHRP  60
NFIGKRSLAE FQQQQSFLQQ QQNRQGLGFY LRNVKPRPKY HQHASPISPL SPVDFPPVPS  120
ISPEFSSSSS VSTSGNSRYG LPILQHHRLQ PMTLSHRSNI RNMSQHTGFA NTGMNISGPG  180
LGPGTEGSAH ESEKIMMSHR LQELEKQLLG DEDDAETVSV VTDSEWSETI QNLINPIIQK  240
PVSPSPTSSS SSCCSSTSAS PPLPCPKQAL IDTAAAISEA KPEAAVEILT RLQQSGNARG  300
TPEQRLTSYM VSALKSRVGP AENQQPISPE IIYGKEHTAS TQMLYDVSPC FKLGFMAANL  360
AILEATWEQG FDKIHVLDFD IGQGGQYLYK LPDESVTTEN LRDELLRRVK SLSPEVMTVV  420
EQEMNTNTAP LTARVRDAYE YYGALFDSLD ATVSRENPDR VRIEEGLSRK ISNSVAGEGR  480
DRVERCEVLG KWRARMSMAG FQPRKMSQLA VESLRSKLNS GTRGNPGFSV NEESGGICFG  540
WMGRILTVAS AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-17392553199375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00310.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851921.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A022QF450.0A0A022QF45_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.F00310.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.13e-64SCARECROW-like 8