PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00088.1.p | ||||||||
Common Name | LOC105964256, MIMGU_mgv1a027027mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HSF | ||||||||
Protein Properties | Length: 462aa MW: 51029.6 Da PI: 5.0896 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.7 | 2.8e-36 | 24 | 116 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d++++ ++sws+ +nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll Migut.F00088.1.p 24 FLSKTYDMVDDPATDAVVSWSKGNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDH---------WEFANEGFLRGHKHLL 107 9*****************************************************************99.........**************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i+r+k + Migut.F00088.1.p 108 KNINRRKPS 116 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.17E-35 | 19 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-61 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.3E-39 | 20 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.4E-20 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.5E-31 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-20 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MEAGVGGGGG GGIVSAAAAS PPPFLSKTYD MVDDPATDAV VSWSKGNNSF VVWNVPEFSR 60 DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD HWEFANEGFL RGHKHLLKNI NRRKPSHAQI 120 QQQQQPAKTQ NSSVGSCIEV GSSGIDGEVE SLKRDKNNLM QELVRLRQQQ QSTDNQLQTV 180 GQRVHVMEQR QQQMMSFLAK AMQSPGFMSQ LVHQQNDSNR QISGGNKKRR LPNQDEENIS 240 RKYSITSPDG QIIQYKPLMN EAAKSMLRQI LNMNTSSRSD SKLSNTSGFL IDQLHPPSDV 300 LDTGSSSNRM SGLTLSEVLP NSAAISEIQS SSGLAVHGNS HDTLFPEVNS GLTDFVLPHG 360 IAPENNMDLC DGTFKGAESI GLDEPLRDYD IDILLDDIQK LPSINDVFWE QFLSSTDDNT 420 DKINGSSEDE QKEQESEWDK LKNLNSLTEH MGLLASASES G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-28 | 1 | 113 | 3 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-28 | 1 | 113 | 3 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-28 | 1 | 113 | 3 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00088.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844238.1 | 0.0 | PREDICTED: heat stress transcription factor A-1 | ||||
Swissprot | Q84T61 | 1e-155 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A022RZ99 | 0.0 | A0A022RZ99_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F00088.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5054 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-129 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00088.1.p |
Entrez Gene | 105964256 |
Publications ? help Back to Top | |||
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