PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.F00040.1.p

Common Name

MIMGU_mgv1a021983mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

GRAS

Protein Properties

Length: 702aa MW: 77765 Da PI: 5.4529

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F00040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	440.7	1e-134	336	700	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPi 90 lv+lLl+cAeavs++d la+++L +l+ +s dgd+mqR+aa+fteAL arla + ++++k +p ++ + + e l++++++++++P+ Migut.F00040.1.p 336 LVHLLLACAEAVSKEDYMLARKYLHHLNRVVSTDGDSMQRVAACFTEALTARLAAtltNKPSTSKLIPFNPFP-PDNLEILKIYQILYQACPY 427 68*************************************************98443456777777888887.4678999******** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 +kf+h+taNqaI ea+e+e rvH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s e+++etg+ L+++A++l+vpfef++ v Migut.F00040.1.p 428 IKFAHFTANQAIFEAFESEGRVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPESVRETGRCLSELAHSLHVPFEFHP-VG 515 *******************************************************....9***********************.7 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 ++ledl++++++ + gEalaVn+v +lhr++ +l ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p Migut.F00040.1.p 516 EELEDLKPHMFNRRVGEALAVNSVNRLHRVP--GNALG----NLLTMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFP 602 ****************************9..34444....6********************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 +ese+r+kvE+ ++++ei+n+va+eg er++rhe+lekWr+ +e GF+ vpls++a++q k ll ++ dgyr+ e++g+l+lgW+dr++++ Migut.F00040.1.p 603 SESEQRTKVEQNIFAPEIKNIVAHEGPERVMRHERLEKWRKIMEGKGFQGVPLSSNAVTQSKILLGLYSCDGYRLTEDRGCLLLGWQDRSILA 695 ***************************************************************************************** PP GRAS 370 vSaWr 374 +SaWr Migut.F00040.1.p 696 ASAWR 700 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.335	310	680	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-132	336	700	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MRSIKTEMGN LKISVGGGVK SENSCCTKEE PTSPGKTNIC SSSSDFETST ITSSSLTPVA 60 SLSNLIPTNL SIPSAALKFE EQNGDIEIHS PDYSMWESIF TDHLLDGDFM MCSPLMNNNM 120 LSPNYNIYNN CGGYAPSLPA LVGSPPRFPP AMHALVGSPP RFPSPLGPHR GKGLSPLNRV 180 FNSPGNQFMQ VDQIESLSLP ALESLLDDDT SYDCKGNAGE HFVSFSPMKI AGDCYDVMPE 240 LLECLTMPDS TRFSDSSNSV QVSSQESGIY DVGVSIAPQP LSQQLQQERQ QEQQHRQPQQ 300 QQQPQFHQQN QIQTMHNTLT VPIPQPEQEQ DCGLQLVHLL LACAEAVSKE DYMLARKYLH 360 HLNRVVSTDG DSMQRVAACF TEALTARLAA TLTNKPSTSK LIPFNPFPPD NLEILKIYQI 420 LYQACPYIKF AHFTANQAIF EAFESEGRVH VIDLDILQGY QWPAFMQALA ARPGGAPFLR 480 ITGVGPSPES VRETGRCLSE LAHSLHVPFE FHPVGEELED LKPHMFNRRV GEALAVNSVN 540 RLHRVPGNAL GNLLTMIRDQ APNIVTIVEQ EASHNGPYFL GRFLEALHYY SAIFDSLDAT 600 FPSESEQRTK VEQNIFAPEI KNIVAHEGPE RVMRHERLEK WRKIMEGKGF QGVPLSSNAV 660 TQSKILLGLY SCDGYRLTED RGCLLLGWQD RSILAASAWR C*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MRSIKTEMGN LKISVGGGVK SENSCCTKEE PTSPGKTNIC SSSSDFETST ITSSSLTPVA  60
SLSNLIPTNL SIPSAALKFE EQNGDIEIHS PDYSMWESIF TDHLLDGDFM MCSPLMNNNM  120
LSPNYNIYNN CGGYAPSLPA LVGSPPRFPP AMHALVGSPP RFPSPLGPHR GKGLSPLNRV  180
FNSPGNQFMQ VDQIESLSLP ALESLLDDDT SYDCKGNAGE HFVSFSPMKI AGDCYDVMPE  240
LLECLTMPDS TRFSDSSNSV QVSSQESGIY DVGVSIAPQP LSQQLQQERQ QEQQHRQPQQ  300
QQQPQFHQQN QIQTMHNTLT VPIPQPEQEQ DCGLQLVHLL LACAEAVSKE DYMLARKYLH  360
HLNRVVSTDG DSMQRVAACF TEALTARLAA TLTNKPSTSK LIPFNPFPPD NLEILKIYQI  420
LYQACPYIKF AHFTANQAIF EAFESEGRVH VIDLDILQGY QWPAFMQALA ARPGGAPFLR  480
ITGVGPSPES VRETGRCLSE LAHSLHVPFE FHPVGEELED LKPHMFNRRV GEALAVNSVN  540
RLHRVPGNAL GNLLTMIRDQ APNIVTIVEQ EASHNGPYFL GRFLEALHYY SAIFDSLDAT  600
FPSESEQRTK VEQNIFAPEI KNIVAHEGPE RVMRHERLEK WRKIMEGKGF QGVPLSSNAV  660
TQSKILLGLY SCDGYRLTED RGCLLLGWQD RSILAASAWR C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-98	343	699	26	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F00040.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012844025.1	0.0	PREDICTED: DELLA protein RGL1-like
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A022QWX0	0.0	A0A022QWX0_ERYGU; Uncharacterized protein
STRING	Migut.F00040.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12566	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-94	RGA-like 1

Link Out ? help Back to Top
Phytozome	Migut.F00040.1.p

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]