PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00040.1.p
Common NameMIMGU_mgv1a021983mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 702aa    MW: 77765 Da    PI: 5.4529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.71e-1343367001374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPi 90 
                       lv+lLl+cAeavs++d  la+++L +l+  +s dgd+mqR+aa+fteAL arla    + ++++k +p ++ +  +  e l++++++++++P+
  Migut.F00040.1.p 336 LVHLLLACAEAVSKEDYMLARKYLHHLNRVVSTDGDSMQRVAACFTEALTARLAAtltNKPSTSKLIPFNPFP-PDNLEILKIYQILYQACPY 427
                       68***************************************************98443456777777888887.4678999************ PP

              GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                       +kf+h+taNqaI ea+e+e rvH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v 
  Migut.F00040.1.p 428 IKFAHFTANQAIFEAFESEGRVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPESVRETGRCLSELAHSLHVPFEFHP-VG 515
                       ***********************************************************....9**************************.7* PP

              GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                       ++ledl++++++ + gEalaVn+v +lhr++    +l     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p
  Migut.F00040.1.p 516 EELEDLKPHMFNRRVGEALAVNSVNRLHRVP--GNALG----NLLTMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFP 602
                       ******************************9..34444....6************************************************** PP

              GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                       +ese+r+kvE+ ++++ei+n+va+eg er++rhe+lekWr+ +e  GF+ vpls++a++q k ll  ++ dgyr+ e++g+l+lgW+dr++++
  Migut.F00040.1.p 603 SESEQRTKVEQNIFAPEIKNIVAHEGPERVMRHERLEKWRKIMEGKGFQGVPLSSNAVTQSKILLGLYSCDGYRLTEDRGCLLLGWQDRSILA 695
                       ********************************************************************************************* PP

              GRAS 370 vSaWr 374
                       +SaWr
  Migut.F00040.1.p 696 ASAWR 700
                       ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.335310680IPR005202Transcription factor GRAS
PfamPF035143.6E-132336700IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MRSIKTEMGN LKISVGGGVK SENSCCTKEE PTSPGKTNIC SSSSDFETST ITSSSLTPVA  60
SLSNLIPTNL SIPSAALKFE EQNGDIEIHS PDYSMWESIF TDHLLDGDFM MCSPLMNNNM  120
LSPNYNIYNN CGGYAPSLPA LVGSPPRFPP AMHALVGSPP RFPSPLGPHR GKGLSPLNRV  180
FNSPGNQFMQ VDQIESLSLP ALESLLDDDT SYDCKGNAGE HFVSFSPMKI AGDCYDVMPE  240
LLECLTMPDS TRFSDSSNSV QVSSQESGIY DVGVSIAPQP LSQQLQQERQ QEQQHRQPQQ  300
QQQPQFHQQN QIQTMHNTLT VPIPQPEQEQ DCGLQLVHLL LACAEAVSKE DYMLARKYLH  360
HLNRVVSTDG DSMQRVAACF TEALTARLAA TLTNKPSTSK LIPFNPFPPD NLEILKIYQI  420
LYQACPYIKF AHFTANQAIF EAFESEGRVH VIDLDILQGY QWPAFMQALA ARPGGAPFLR  480
ITGVGPSPES VRETGRCLSE LAHSLHVPFE FHPVGEELED LKPHMFNRRV GEALAVNSVN  540
RLHRVPGNAL GNLLTMIRDQ APNIVTIVEQ EASHNGPYFL GRFLEALHYY SAIFDSLDAT  600
FPSESEQRTK VEQNIFAPEI KNIVAHEGPE RVMRHERLEK WRKIMEGKGF QGVPLSSNAV  660
TQSKILLGLY SCDGYRLTED RGCLLLGWQD RSILAASAWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-9834369926378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844025.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A022QWX00.0A0A022QWX0_ERYGU; Uncharacterized protein
STRINGMigut.F00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-94RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]