PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00016.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 549aa MW: 60634.1 Da PI: 4.7542 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.1e-11 | 335 | 377 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L Migut.F00016.3.p 335 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 377 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.866 | 328 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-16 | 331 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-14 | 334 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-9 | 334 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.91E-13 | 335 | 381 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.2E-16 | 335 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.05E-7 | 456 | 497 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MLPPRSVWMD GEEEEEEEAA PMMISSSWNN NNNNEMDDAE MNMNMNASLS SFKSMLDNNP 60 VDSSSSSAAA AAAAFINNNG NASASPFYNI NNDFSTNHLY FNPPLDLDSS SSLSNPPFIL 120 DNHNQMPPNN KSLVIPSLFN NIFDNPFDFS SCDPPSFFPS LDPPPPPPPL FMGPAAAFDA 180 SLTSLFHPTP DFFPLPHDTT SAAPFFEGFD LTNRSKLLRP LQVSPPLGAP PTLFQKRAAL 240 RHTSKSDQGL TSLDDTVGME ELEWGKKRKR NYEDDDEDEM DDEMAAAADI STINYDSDEP 300 TDNKLGGDDN ANSSITVGAG LKGKKKGGMP AKNLMAERRR RKKLNDRLYM LRSVVPKISK 360 MDRASILGDA IDYLKELLQR INDLHNELEG TTPSSSSLGS MMQHQSTASF HPLTPTPPTL 420 PYRIVKEELC ASSTPSPKNQ PAKVEVRLRE GRGVNIHMFC ARRPGLLLST MRALDNLGLD 480 IQQAVISCFN GFALDVFRAE RRSGCFARAD QSSASGFCRV SWCYVESTLV QTIYLYLHLL 540 FWMILGPY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 323 | 342 | KKKGGMPAKNLMAERRRRKK |
2 | 336 | 343 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00016.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844058.1 | 0.0 | PREDICTED: transcription factor SCREAM2 | ||||
Swissprot | Q9LPW3 | 1e-106 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | A0A022QVD2 | 0.0 | A0A022QVD2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F00016.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 2e-92 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00016.3.p |