PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E01778.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HSF | ||||||||
Protein Properties | Length: 351aa MW: 39848.8 Da PI: 4.5312 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.4 | 1.5e-35 | 46 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k++e++ed++++++isws+ +nsfvv+d+ +f++ +Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++ weF+++ F g+k+ll Migut.E01778.1.p 46 FLTKTFEMVEDPSTDSVISWSRAKNSFVVWDSYKFSTALLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLL 129 9********************999*****************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++ikr+++ Migut.E01778.1.p 130 KTIKRRRN 137 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.5E-34 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.9E-60 | 42 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 8.5E-38 | 42 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.5E-19 | 46 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.0E-31 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 85 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MEGVKLEVVE DDCIIITATA AASPSSSSSS SPHPMEGLHE VGPPPFLTKT FEMVEDPSTD 60 SVISWSRAKN SFVVWDSYKF STALLPRYFK HSNFSSFIRQ LNTYGFRKVD PDRWEFANEG 120 FLGGQKHLLK TIKRRRNVAP SSTTPQCIGG GSTTITELIN EEEEIEKLKR DRDTLMAEIM 180 KLKQQQKSSK ERMTAMEERI QTTEKKQHQI MSFLAKAFRS PVFVQQYVQK KEEKHIEIGQ 240 KRRLTMSPSV ESDLQEMING DDINIESKVE SFLLPEEVPF SGDLNDAGLI NNNHIDNNIW 300 EDFLSDDFLV GGDEVEEAVL PDEVEVEELV ENTPEWGEDL RDLVHQLGFL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-25 | 44 | 135 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 5e-25 | 37 | 135 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-25 | 37 | 135 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-25 | 37 | 135 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E01778.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012843410.1 | 0.0 | PREDICTED: heat shock factor protein HSF30 | ||||
Swissprot | P41152 | 1e-122 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A022R0J7 | 1e-179 | A0A022R0J7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E01778.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 2e-96 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.E01778.1.p |
Publications ? help Back to Top | |||
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