PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.E01637.1.p | ||||||||
Common Name | LOC105954136, MIMGU_mgv1a026621mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 118aa MW: 12833.8 Da PI: 7.869 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.8 | 3.8e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e ++ C + + lC C l H g H++ pl Migut.E01637.1.p 4 QCDACEAAAAEVVCCTEEAALCGGCDLRNHAGntmatnHQRLPL 47 7******99*********************88999999998775 PP | |||||||
2 | zf-B_box | 30.9 | 5.7e-10 | 53 | 94 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 ++C++++e lfC ++++ lC++C ++Hk+ H+ Migut.E01637.1.p 53 PRCDTCQETLGWLFCLEDRVVLCRQCDISTHKSrpfgsghHR 94 79******9999*******************99899999555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.7E-4 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-7 | 50 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-7 | 53 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.94E-5 | 53 | 97 | No hit | No description |
PROSITE profile | PS50119 | 8.902 | 55 | 97 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 118 aa Download sequence Send to blast |
MKIQCDACEA AAAEVVCCTE EAALCGGCDL RNHAGNTMAT NHQRLPLSTA LRPRCDTCQE 60 TLGWLFCLED RVVLCRQCDI STHKSRPFGS GHHRLLLTNV KVGLHPKQST TTIKLVN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.E01637.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833263.1 | 4e-82 | PREDICTED: B-box zinc finger protein 22-like | ||||
Swissprot | Q9SYM2 | 1e-36 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A022RM21 | 9e-81 | A0A022RM21_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2892 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78600.1 | 6e-27 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.E01637.1.p |
Entrez Gene | 105954136 |