PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E01524.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 27764.9 Da PI: 4.9567 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Migut.E01524.1.p 72 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 122 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.6E-13 | 72 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-37 | 73 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 73 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.261 | 73 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-21 | 73 | 131 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-10 | 74 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.75E-31 | 74 | 132 | No hit | No description |
PRINTS | PR00367 | 2.8E-10 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MVAPPQTSSG DNELFSNLLS SSSLILSQTQ SLQRDDAAAK GQAAAAVAPE SGKKIKRIRE 60 STATASNSSR HPVYRGVRMR SWGKWVSEIR EPRKKSRIWL GTFPTPEMAA RAHDVAALSI 120 KGASATLNFP ELAAALPRPV SLSPRDVQAA AAKAAAMEKF DDLPSPSTTT SSSSSSLSSL 180 VSSVDLSTES EEELSEIVQL PSLGSYFDSV GLRSDFVYID NAAVEGWTLD LHPSPPWAGG 240 GGVIDDDGGI SSCFETLFWN Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-18 | 71 | 131 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E01524.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847040.1 | 1e-162 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 1e-61 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A022QMV0 | 1e-108 | A0A022QMV0_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.E01524.1.p |
Publications ? help Back to Top | |||
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