PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E01292.1.p
Common NameLOC105966370, MIMGU_mgv1a021768mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 669aa    MW: 74192.4 Da    PI: 6.5131
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E01292.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.85.2e-1252766521374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                       l++lL++c e + s++ + ++++Larl  +asp+g +p++Rl+ayfteAL+ r ar ++++++  +p+e++    +  ++al+++++vsPi+k
  Migut.E01292.1.p 276 LIDLLVTCTEQMGSKNIASVNHCLARLGAIASPRGpTPTHRLVAYFTEALSLRAARLWPHIFHVTAPREEE----DGGTTALRALNQVSPIPK 364
                       5789**********************************************************999888886....677788999********* PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       f h+t N+ +l+a+eg++rvHiiDfd++qGlQWp+L+q+LasR+++p ++RiTgvg+    sk+el etg+rL+ fA++l++pfef++ v++r
  Migut.E01292.1.p 365 FVHFTSNEILLRAFEGKDRVHIIDFDVKQGLQWPSLFQSLASRRNPPSHVRITGVGE----SKQELIETGDRLSGFADALNIPFEFHP-VVDR 452
                       *********************************************************....***************************.7*** PP

              GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                       led++l++L+vk+ +E++aVn+ +qlh++l ++++++       + +++L+l++s++++ vv++eqe  hn+ ++  r++++l+yysa+fds+
  Migut.E01292.1.p 453 LEDVRLWMLHVKEkKETVAVNCLFQLHKMLYDTTTTAAgggggaALRDFLSLIRSTNAEAVVIAEQEGAHNGVDLESRVSNSLKYYSAIFDSV 545
                       *************9****************99999998888888899********************************************** PP

              GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee....sgslv 359
                       + +lp es++rik+E++ +g+ei+n+vaceg+er+erhe + +Wre++++ GF+   ++e+++ q +++l++++ +d y+v  +     +s+ 
  Migut.E01292.1.p 546 DPSLPLESKARIKIEEM-FGKEIRNIVACEGRERVERHEGFDRWREMIGREGFRCTGIEEREVLQGQMMLKMTYgGDNYSVATRdengAASVS 637
                       *****************.********************************************************9999***954333334455 PP

              GRAS 360 lgWkdrpLvsvSaWr 374
                       l W d+pL++vSaW+
  Migut.E01292.1.p 638 LSWLDQPLYTVSAWK 652
                       **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.691250627IPR005202Transcription factor GRAS
PfamPF035141.8E-122276652IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MLAGCPSTLL SPRHRLRSEA CHHSIPTMST QRLDLPCTTF PRKDSSRAPP VRPVGLSVEK  60
PVEAKTVVTG CSIKLRDNRD DFWEKNKNQN KKKKRFAAEV SYEDDDDLDK NYMDRVKRKR  120
CNNNNAGEEE QHQQQQHLSL GSESFWFHPG FISTPQLPFS ISCSAAQEDE DENRVCFVPS  180
DVILAPPPLP PLSNIPWFQC KKNFEGGPTY KKEASGSSSS TSLSSESDRG LVLSNPVGRV  240
IGNGSSPSGP SGARSQQVLA ANQENSNTEE NECVELIDLL VTCTEQMGSK NIASVNHCLA  300
RLGAIASPRG PTPTHRLVAY FTEALSLRAA RLWPHIFHVT APREEEDGGT TALRALNQVS  360
PIPKFVHFTS NEILLRAFEG KDRVHIIDFD VKQGLQWPSL FQSLASRRNP PSHVRITGVG  420
ESKQELIETG DRLSGFADAL NIPFEFHPVV DRLEDVRLWM LHVKEKKETV AVNCLFQLHK  480
MLYDTTTTAA GGGGGAALRD FLSLIRSTNA EAVVIAEQEG AHNGVDLESR VSNSLKYYSA  540
IFDSVDPSLP LESKARIKIE EMFGKEIRNI VACEGRERVE RHEGFDRWRE MIGREGFRCT  600
GIEEREVLQG QMMLKMTYGG DNYSVATRDE NGAASVSLSW LDQPLYTVSA WKAVDFEGGS  660
SSSYSRIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6328365126378Protein SCARECROW
5b3h_A2e-6328365125377Protein SCARECROW
5b3h_D2e-6328365125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E01292.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846382.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A022QMA80.0A0A022QMA8_ERYGU; Uncharacterized protein
STRINGMigut.E01292.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-165GRAS family protein