PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E01228.1.p
Common NameLOC105955093, MIMGU_mgv1a019113mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 341aa    MW: 37126.2 Da    PI: 5.2636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E01228.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-20135184255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +g+W+AeIrdps+   r+r +lg++ taeeAa  +++a+ kl+g
  Migut.E01228.1.p 135 KFRGVRRRP-WGKWAAEIRDPSQ---RARLWLGTYNTAEEAAMVYDHAAIKLRG 184
                       89*******.**********965...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-29134192IPR001471AP2/ERF domain
SMARTSM003807.8E-38135198IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22135192IPR016177DNA-binding domain
PfamPF008479.0E-13135184IPR001471AP2/ERF domain
CDDcd000184.53E-32135191No hitNo description
PROSITE profilePS5103223.907135192IPR001471AP2/ERF domain
PRINTSPR003677.9E-10136147IPR001471AP2/ERF domain
PRINTSPR003677.9E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLQPEEQTML SGKLVKYSEH LSQTTTVIMP EYSVSGGRRT FPAGMAGRTV RISVTDADAT  60
DSSSDEEGRC SAKRRQRVRK FINEVRIQPP CRDYGNGNGN GNANGVPSVS LVKQRRKSGG  120
GGSVESTAEV GNARKFRGVR RRPWGKWAAE IRDPSQRARL WLGTYNTAEE AAMVYDHAAI  180
KLRGPDALTN FSTPPPPPQP TPPPPPLKYN NTSSGYNSSE DSHNNIVKSP KSVLRFVSAA  240
ESQADSSNDP VSVNDKCESD TSIFPMDFFR DFENPVTVPD LFDGASFSDN IFGMDVDCCG  300
DMLIGSDTDL GFRFGSSSWQ PDCFLQDFGD IFGSDPLIAL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19134191159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RRQRVRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E01228.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834244.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A022RIP20.0A0A022RIP2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-50cytokinin response factor 2