PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E01206.1.p
Common NameLOC105955101, MIMGU_mgv1a017935mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 319aa    MW: 36258.9 Da    PI: 6.6933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E01206.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+lv++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Migut.E01206.1.p 14 RGLWSPEEDEKLVRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                      788*******************************************97 PP
2Myb_DNA-binding52.98.2e-1767111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  Migut.E01206.1.p  67 RGRFTQEEEKLIISLHGAVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                       89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.1961IPR017930Myb domain
SuperFamilySSF466897.11E-3011108IPR009057Homeodomain-like
SMARTSM007173.3E-121363IPR001005SANT/Myb domain
PfamPF002493.2E-151461IPR001005SANT/Myb domain
CDDcd001677.12E-111761No hitNo description
PROSITE profilePS5129425.31662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2565116IPR009057Homeodomain-like
SMARTSM007171.9E-1666114IPR001005SANT/Myb domain
PfamPF002492.4E-1567111IPR001005SANT/Myb domain
CDDcd001672.92E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLVRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TQEEEKLIIS LHGAVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
SPNITKTIPK SQLFTHTRNH HQVLDNFLNI NNQDNLAATK LSTTSIQETG GLFPLPISPS  180
FMFEIGSTFE STNNIPHTIF QENEGLMMNN QETWQLFNRE TVEYTSCNLT LPIMDNLDNI  240
MVPNNCGINV GGGGGQITAV DCMQRNEINE WGVDPVQCPN YFFWDQAEGH HELIGAEEII  300
STSSNMGDLM ISHFPSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E01206.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834254.10.0PREDICTED: transcription factor MYB46
TrEMBLA0A022RJ960.0A0A022RJ96_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124391722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.15e-88myb domain protein 103