PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E01159.1.p
Common NameLOC105958587, MIMGU_mgv1a010809mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TALE
Protein Properties Length: 302aa    MW: 34105.5 Da    PI: 6.6135
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E01159.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.5e-082502832154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp+++++++L +++gL+ +q+ +WF N+R +
  Migut.E01159.1.p 250 KWPYPTEDDKAKLVEQTGLQLKQINNWFINQRKR 283
                       469*****************************87 PP
2ELK25.53.2e-09204225122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK +L++++++++ ++++E++
  Migut.E01159.1.p 204 ELKIELKQGFKSRIEDVREEIL 225
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-173579IPR005540KNOX1
PfamPF037902.3E-163778IPR005540KNOX1
SMARTSM012561.9E-2093148IPR005541KNOX2
PfamPF037916.4E-1598147IPR005541KNOX2
PROSITE profilePS512139.132204224IPR005539ELK domain
PROSITE profilePS5007111.677224287IPR001356Homeobox domain
SuperFamilySSF466892.82E-16226291IPR009057Homeodomain-like
SMARTSM003891.6E-10226291IPR001356Homeobox domain
CDDcd000862.42E-11227288No hitNo description
Gene3DG3DSA:1.10.10.604.4E-25231290IPR009057Homeodomain-like
PfamPF059201.2E-17244283IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQEQEHEGMT SMMMGCDGGG GINNADVVSG EVVNHQLKAE IAAHPLFEQL VAAHVACLRV  60
ATPIDQLPLI DAQLTQSHHI LRSYAHSATH HHHSLSPPQR QDLDNFLAQY MVVLCSLREQ  120
LQQHVRIHAV EAVMACREIE HNLLSLTGAT LGEGSGATIS DDEEEIQMDY SMDQSLADGN  180
DLMGFGPLLP TESERSLMDR VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTTV  240
LKNWWQQHSK WPYPTEDDKA KLVEQTGLQL KQINNWFINQ RKRNWHSNSQ SATSLKSKRK  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A8e-13227283864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280300RKRNWHSNSQSATSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E01159.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838041.10.0PREDICTED: homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-162KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A022RDJ40.0A0A022RDJ4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-160KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]