PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00830.2.p | ||||||||
Common Name | LOC105950316, MIMGU_mgv1a004195mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GATA | ||||||||
Protein Properties | Length: 540aa MW: 61031.9 Da PI: 5.9222 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.3e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Migut.E00830.2.p 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-9 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.23E-11 | 4 | 46 | No hit | No description |
CDD | cd00202 | 7.70E-17 | 6 | 55 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 4.0E-9 | 286 | 380 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MGKHGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPEDLDDY 60 RVKSFSVKNK EEKFLKRKYN NNNNNNNNNN ISITEYPAEY NQNQNHHGFR KVFDEDTSNR 120 SSSGSAISIS NSEQYGNADA SELTGPSQQG VVWERMVPSR KRTCVSRSKP SSVEKLTRDL 180 FTILHEQQSS CLSGCSEEEQ LLLLESDKPM ESVEFGHGSV LIRHPSSILL ANGEEESEAS 240 SLSFDNNKQH TMNSKVTVFP ALIDKIKKPP NPVTEQERIR RGKDQVENLQ IMSHRNSPLC 300 CVDLQEIVNF DKFANHLTKD EQQQLLKYLP PLDTLESSDR NLLPISQIRS ILESPEFKEN 360 LLSFQKLLSD GLFDNSFSSL NTEQDCKLLK KLVLSNFTKS KWIEQYQIFK DSKGKNINEP 420 NALATASSLS LKRPRGEGLQ QHHKFLGSKA IMRRSYDEEE EELVADKSSS FFTSSRIINN 480 NDDDYESCHF GYEEDDMLLD IPSNGSFPQA EAELLIMPSS SFDGQASTST TSTYFLNRP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00830.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829122.1 | 0.0 | PREDICTED: GATA transcription factor 27-like isoform X2 | ||||
TrEMBL | A0A022PUF2 | 0.0 | A0A022PUF2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E00830.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-93 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00830.2.p |
Entrez Gene | 105950316 |