PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00341.1.p | ||||||||
Common Name | MIMGU_mgv1a024573mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 265aa MW: 29366.2 Da PI: 5.9207 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.6 | 2.2e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++dC+l+p++ p++q++++ +++k++G++ +++l++a + r+++++sl+yeA+ r+ dPvyG+vg++ ++++ + Migut.E00341.1.p 4 SCNGCRVLRKGCSEDCTLRPCLewiksPESQANATLFLAKFYGRAGLVNLINAGAADLRPEIFRSLLYEACGRIIDPVYGSVGMMCSGNWPRC 96 6******************************************************************************************** PP DUF260 89 qlkaelallke 99 q+++e++l+++ Migut.E00341.1.p 97 QAAVEAVLRGA 107 ****9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.152 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.2E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEDCT LRPCLEWIKS PESQANATLF LAKFYGRAGL VNLINAGAAD 60 LRPEIFRSLL YEACGRIIDP VYGSVGMMCS GNWPRCQAAV EAVLRGAPIM KHDDSSSTAA 120 AARAGEEYPI SPLQSCDIRH LSKDSSTAAA SLHRVRTRNR FKRSASQAKN QVNSLVADFD 180 LIEPEDKFTI TGWEHGEEEE EDQKDFIEQL KRAPSHDSVS VETVEPSLMN RVEQPVRCVL 240 KQEPDHEIGL ELTLGRDPVL HAYF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00341.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846047.1 | 0.0 | PREDICTED: LOB domain-containing protein 42-like | ||||
TrEMBL | A0A022QR01 | 0.0 | A0A022QR01_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E00341.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-68 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00341.1.p |