PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.E00336.1.p | ||||||||
Common Name | LOC105966019, MIMGU_mgv1a013769mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 23686.4 Da PI: 5.5828 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.1 | 2.9e-15 | 65 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +g+++AeIrd s k+kr +lg+f taeeA + + +++leg Migut.E00336.1.p 65 SKFVGVRRRE-SGKYAAEIRDSS---KKKRLWLGTFPTAEEASRVYLSKKRELEG 115 79*****999.7*********32...46************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.57E-18 | 65 | 106 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-13 | 65 | 116 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-8 | 65 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 66 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-18 | 66 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-15 | 66 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-6 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-6 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MENLTNNAKK IRVTYSDPDA TDSSSDETES TQKKSKRKVH EVFVAADAVN FADEVVKFRK 60 RTGKSKFVGV RRRESGKYAA EIRDSSKKKR LWLGTFPTAE EASRVYLSKK RELEGKLKAK 120 RGSDWIPCEK PPSAQDSPSS VLENENFEPP EEIRRRDAAA GEEVSGEDKV GYFFGVQIVD 180 QNGFLVGEFS KLDDLSICAA EEAAEEADYK F* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 70 | 89 | RRRESGKYAAEIRDSSKKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.E00336.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846016.1 | 1e-152 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A0A022QQZ6 | 1e-151 | A0A022QQZ6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5075 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-15 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.E00336.1.p |
Entrez Gene | 105966019 |