PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.E00335.1.p | ||||||||
Common Name | LOC105966169, MIMGU_mgv1a009122mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 39111.1 Da PI: 4.5484 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.6e-18 | 106 | 153 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 +y+GVr++k +g+W+AeIrdp + kr++lg+++tae+A a++ r ++ Migut.E00335.1.p 106 KYRGVRQRK-WGKWAAEIRDPI----QhKRVWLGTYDTAEDASMAYEIRRMEF 153 8*******9.**********82....46******************9877665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-11 | 106 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 106 | 153 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.205 | 106 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-20 | 106 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.38E-23 | 106 | 146 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-22 | 106 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MFVKKTIPEL RKPVRFNQVS ISKKPRAKPE PARQPRRVRI ICNDPDATDS SDDEGAPEKV 60 KRVIREVYFP THDPVKATKP TADEIAKKEK VFPPKIEIKR NSVTGKYRGV RQRKWGKWAA 120 EIRDPIQHKR VWLGTYDTAE DASMAYEIRR MEFEEMAKNS GVDFSFEKSS SNSKNNVEKP 180 KKHLKDAVLD SSVSEESSGS AVSLTSHTSP ASVLELLELD SLTSAWGFDV KNEEVKAMDN 240 VLLEANNVVE DNINDELMAL AQIGQEMDLD MDMEFGPLLA GDGFSAALDD FVSDFLDIPI 300 GGTHEDDGGP IPLPDCDFDF DFGGCVDDLA WIDDVPVPPV MNGATPLNIA CP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 105 | 147 | 13 | 56 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.E00335.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846186.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A022QRT5 | 0.0 | A0A022QRT5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2957 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-27 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.E00335.1.p |
Entrez Gene | 105966169 |