PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00326.1.p | ||||||||
Common Name | MIMGU_mgv1a007817mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HSF | ||||||||
Protein Properties | Length: 344aa MW: 37929.3 Da PI: 4.7925 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.9 | 3.8e-34 | 18 | 108 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 F++k+y++++d++++ li w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll Migut.E00326.1.p 18 FVMKTYQMVNDPATDGLIAWGKANNSFIVVEPLDFSQRILPVYFKHHNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQTQLL 101 9****************************************************************999.........**************** PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i rkk Migut.E00326.1.p 102 CNIARKK 108 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.5E-50 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.98E-33 | 15 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.8E-35 | 16 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.7E-17 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.1E-29 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-17 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 57 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-17 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MRGGMEMNNG NGSMIAPFVM KTYQMVNDPA TDGLIAWGKA NNSFIVVEPL DFSQRILPVY 60 FKHHNFSSFV RQLNTYGFRK VDPDRWEFAN EWFLRGQTQL LCNIARKKLT GKSHTLNLRQ 120 LDGGGGGGDD EDEELITEIA RLKEEQKNLE QELESMNRRL EATERRPQQM MTFLYKVVED 180 PEMLPRMMLE KEMNIRSGGR LIASCVDSDK KKRKVIATKS ATDYSSSASS SIKTEDDLEP 240 RTNVGGESSS PISSPDGNFD VDAYNYRKSE PDWLGFRGSS GYADLDSPSF RGSGGEGGGF 300 VAVAPPVNGG ADGFDGNYFE GLIGGENAST QPPYPFSLLG GGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-26 | 1 | 107 | 8 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-26 | 1 | 107 | 8 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-26 | 1 | 107 | 8 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 209 | 214 | KKKRKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00326.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846107.1 | 0.0 | PREDICTED: heat stress transcription factor C-1 | ||||
Swissprot | Q9LV52 | 5e-87 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A022QMQ5 | 0.0 | A0A022QMQ5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E00326.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6832 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 3e-76 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00326.1.p |
Publications ? help Back to Top | |||
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