PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E00260.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 410aa MW: 44997.3 Da PI: 6.6308

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00260.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.2e-10	247	295	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Migut.E00260.1.p 247 NSHSLAERIRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 295 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-17	242	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-11	242	299	No hit	No description
PROSITE profile	PS50888	15.58	244	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	245	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-7	247	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDMSGNDTNV GPPKPSEDAV DYRVATLSNN VTNASIEMIT SANRMVKSSS CSSSAPMVDS 60 FCPSVWEQQS LGYCDTSVRN GALLNALPHS LTHFPTDPAF IERAARFSCF SNGGSFSEMV 120 NPLTILDPLN PRNRAVGPVV GPNEVFLGNG SNPLKDEKNG VDLGGNQSDG AEFSRSGERE 180 VSNGNGWKKR KRIEKKNENN EAQQTCVETT EIRRNPRGKN GNLEPQGSDP PKEDYIHVRA 240 RRGQATNSHS LAERIRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF 300 LSMKLATVNP RMDFNIEGLI AKDILQPRTG LSSSIPFPND MTMLFPPFQP TVNVGGGFRQ 360 PSSQHMQAPS TAWEDEFHNV FRNGFNSSSP PNNSQDLSVT LPGHMKDEI*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDMSGNDTNV GPPKPSEDAV DYRVATLSNN VTNASIEMIT SANRMVKSSS CSSSAPMVDS  60
FCPSVWEQQS LGYCDTSVRN GALLNALPHS LTHFPTDPAF IERAARFSCF SNGGSFSEMV  120
NPLTILDPLN PRNRAVGPVV GPNEVFLGNG SNPLKDEKNG VDLGGNQSDG AEFSRSGERE  180
VSNGNGWKKR KRIEKKNENN EAQQTCVETT EIRRNPRGKN GNLEPQGSDP PKEDYIHVRA  240
RRGQATNSHS LAERIRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  300
LSMKLATVNP RMDFNIEGLI AKDILQPRTG LSSSIPFPND MTMLFPPFQP TVNVGGGFRQ  360
PSSQHMQAPS TAWEDEFHNV FRNGFNSSSP PNNSQDLSVT LPGHMKDEI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00260.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855361.1	0.0	PREDICTED: transcription factor bHLH49 isoform X2
Swissprot	Q9CAA9	5e-79	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A022Q5T5	0.0	A0A022Q5T5_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.E00260.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	Migut.E00260.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]