PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00205.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 367aa MW: 39872.7 Da PI: 9.6242 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.1e-18 | 52 | 102 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp++ + r +lg+f+taeeAa a++ a+++++g+ Migut.E00205.1.p 52 RYRGVRRRP-WGRYAAEIRDPNS---KERRWLGTFDTAEEAACAYDTAARAMRGA 102 59*******.**********832...4999**********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.6E-11 | 52 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.207 | 52 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-30 | 52 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-21 | 52 | 109 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.6E-33 | 52 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.38E-30 | 52 | 108 | No hit | No description |
PRINTS | PR00367 | 2.0E-9 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MEQALIRRTH NHRTSIADHP TTAATKRCYT TTNKRPLKKE DPPPPPSGGG IRYRGVRRRP 60 WGRYAAEIRD PNSKERRWLG TFDTAEEAAC AYDTAARAMR GAKARTNFLY PMSTNHPATT 120 DQNLVPSFSY GKSSQPSIFG TRHVAPSSSP FAANPNLDFT VSSLMKSNNS LDITTCSFMG 180 SSSSSSMYIN PSCNTTTAQP ATPMNAAAGV SEVFTNGVSS STGGETDCMG FFHTERSNSG 240 LLQEVLNGFF PGYSKAAPPA DSFAPPPPVA ALAEVKTSCL STDNYCQIVA PRLNYTRDFF 300 EGQVLTRQGS MTKHNCLCSP TTHVGSFRCR LHRLPSLNRT KSIDDDSAKV IVSYNLTAEP 360 KISKKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 52 | 108 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00205.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855172.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A022Q4J3 | 0.0 | A0A022Q4J3_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 6e-16 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00205.1.p |