PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00083.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 400aa    MW: 44087.6 Da    PI: 6.3228
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00083.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-16131176147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Migut.E00083.1.p 131 RGHWRPAEDSKLKELVAHYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 176
                       899*****************************.***********996 PP
2Myb_DNA-binding54.92e-17183226146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Migut.E00083.1.p 183 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 226
                       678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.294126177IPR017930Myb domain
SMARTSM007175.4E-14130179IPR001005SANT/Myb domain
PfamPF002491.1E-15131176IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-27131224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-25132184IPR009057Homeodomain-like
CDDcd001671.27E-12134175No hitNo description
PROSITE profilePS5129426.846178232IPR017930Myb domain
SMARTSM007174.4E-14182230IPR001005SANT/Myb domain
PfamPF002495.5E-14183225IPR001005SANT/Myb domain
CDDcd001675.62E-11185225No hitNo description
Gene3DG3DSA:1.10.10.602.0E-20185231IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MASKNCSAIY LTSSSSSSST LGSSMADMMV YSDHLRSSST TTRPVINSPA RFGSSSSYKP  60
EWGFPYSDET NNSDGKCSDH SSSGVFGENN DTMFDLNAAL NEEEEDEEEE CGMHAFKDGS  120
NASGQSKLCA RGHWRPAEDS KLKELVAHYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR  180
INRRAFSEEE EERLMAAHRL YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KYREQSSAYR  240
RRKMGQFVFK RMEDDDLPVS KTHEPPLQTF GGGGGGVLCG LSGGGASGYN GGNGFWAPQT  300
SLGFFPGFPS SSSDMMSIFN HSKQWEEPNF HNPTNSYDRH NFPSQPPSLY HYPSSAFPSA  360
AAAQEVPAAM EQPTTAADQE RISPPPPPPF IDFLGVGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-331312317107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00083.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0531656e-85KR053165.1 Erythranthe lewisii R2R3-MYB transcription factor (RCP1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855444.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A022Q5C61e-173A0A022Q5C6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-75myb domain protein 105