PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00076.1.p
Common NameLOC105974786, MIMGU_mgv1a023545mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 370aa    MW: 40768 Da    PI: 7.5242
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEde+l+ +++++G g+W++ +++ g++R++k+c++rw +yl
  Migut.E00076.1.p 14 KGPWTPEEDEKLLAYIHEHGHGSWRALPSKAGLRRCGKSCRLRWANYL 61
                      79********************************************97 PP
2Myb_DNA-binding53.94.3e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E+e +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Migut.E00076.1.p  67 RGKFSLQEEETIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-25664IPR009057Homeodomain-like
PROSITE profilePS5129418.157961IPR017930Myb domain
SuperFamilySSF466894.4E-3010108IPR009057Homeodomain-like
SMARTSM007175.3E-151363IPR001005SANT/Myb domain
PfamPF002493.6E-171461IPR001005SANT/Myb domain
CDDcd001671.17E-111661No hitNo description
PROSITE profilePS5129426.50362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2665116IPR009057Homeodomain-like
SMARTSM007178.2E-1766114IPR001005SANT/Myb domain
PfamPF002494.1E-1667112IPR001005SANT/Myb domain
CDDcd001675.08E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRTACCEKM GLKKGPWTPE EDEKLLAYIH EHGHGSWRAL PSKAGLRRCG KSCRLRWANY  60
LRPDIKRGKF SLQEEETIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKKLTKMG  120
IDPITHKPKN LVAVDCGQSK EIANISHMAQ WESARLEAEA RLVLRGAPNP FHSDLSFVNK  180
ASAAAPPLPP RPRPPCLDIL KVWAWTNPDK DISTMILNGY SPSSWSIINQ PTQNTPTSNF  240
SENTVQIQDV GLFNGDSSIN AIPNVKGIMG NSMELHYTTT TMNPTSDDYT TSSYTNGDSF  300
LGFPSFVEGF VDVPSSAVQN GYSDGNDNNS NNVVVGGGWG VLDESNVNCW NNVLDFPTCS  360
PPMGSSVLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00076.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2022740.0HQ202274.1 Mimulus guttatus isolate A pop-variant IM62 MYB transcription factor MIXTA-like 5 protein (MYBML5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855393.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A022Q3370.0A0A022Q337_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-97myb domain protein 16
Publications ? help Back to Top
  1. Scoville AG,Barnett LL,Bodbyl-Roels S,Kelly JK,Hileman LC
    Differential regulation of a MYB transcription factor is correlated with transgenerational epigenetic inheritance of trichome density in Mimulus guttatus.
    New Phytol., 2011. 191(1): p. 251-63
    [PMID:21352232]