PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00040.1.p | ||||||||
Common Name | LOC105952616, MIMGU_mgv1a014827mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | YABBY | ||||||||
Protein Properties | Length: 178aa MW: 19734.3 Da PI: 9.574 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 174.4 | 7e-54 | 8 | 163 | 4 | 163 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesast 94 + sse++Cyv+CnfCntilav++P + ++++vtv+CGhC++l s+ + ++l+++l+ + e+k+ +++++s +++ +++t Migut.E00040.1.p 8 QYSSEHICYVRCNFCNTILAVEIPRKQMLETVTVKCGHCSNLSF-----LSTKPPPLHDLQTTLRLHglTSREHKKGQSATSSSSSSSINNNT 95 679*************************************9744.....33444555556666655542344445555555555555555666 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 s ++ls n++ ++ +p v++PPekr r Psayn f+keeiqrika+nP++ hreafsaaaknW+ + Migut.E00040.1.p 96 SSDETSLSLNTTTTTT-TPFVVKPPEKRHRLPSAYNIFMKEEIQRIKAANPEVPHREAFSAAAKNWSRY 163 6666677888877776.5779*********************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.8E-55 | 10 | 163 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.09E-9 | 107 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-5 | 117 | 162 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 6.26E-6 | 124 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MITMDLVQYS SEHICYVRCN FCNTILAVEI PRKQMLETVT VKCGHCSNLS FLSTKPPPLH 60 DLQTTLRLHG LTSREHKKGQ SATSSSSSSS INNNTSSDET SLSLNTTTTT TTPFVVKPPE 120 KRHRLPSAYN IFMKEEIQRI KAANPEVPHR EAFSAAAKNW SRYIPNTPQG PVSRSSN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00040.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831636.1 | 1e-129 | PREDICTED: protein CRABS CLAW-like | ||||
Refseq | XP_012831637.1 | 1e-129 | PREDICTED: protein CRABS CLAW-like | ||||
Swissprot | Q8L925 | 7e-57 | CRC_ARATH; Protein CRABS CLAW | ||||
TrEMBL | A0A022RT63 | 1e-128 | A0A022RT63_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E00040.1.p | 1e-129 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5210 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 4e-57 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00040.1.p |
Entrez Gene | 105952616 |
Publications ? help Back to Top | |||
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