PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02551.1.p
Common NameLOC105956016, MIMGU_mgv1a010579mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 309aa    MW: 34594.2 Da    PI: 7.5955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02551.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-1659106148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+WT eEd+ll d++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Migut.D02551.1.p  59 RGPWTVEEDKLLSDYIKREGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 106
                       89******************************99************97 PP
2Myb_DNA-binding48.12.7e-15112157148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg  + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Migut.D02551.1.p 112 RGHISSDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 157
                       566799****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-2150109IPR009057Homeodomain-like
PROSITE profilePS5129415.17554106IPR017930Myb domain
SuperFamilySSF466893.67E-2856153IPR009057Homeodomain-like
SMARTSM007173.4E-1258108IPR001005SANT/Myb domain
PfamPF002493.6E-1459106IPR001005SANT/Myb domain
CDDcd001674.79E-1061106No hitNo description
PROSITE profilePS5129424.394107161IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-24110162IPR009057Homeodomain-like
SMARTSM007172.4E-14111159IPR001005SANT/Myb domain
PfamPF002496.9E-14112157IPR001005SANT/Myb domain
CDDcd001673.34E-11116157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MYVCMYVCVL VRATTQQMRS PSLSSSSNQT PPPPPKGGGG GGKKVEAATP CCSKVGLKRG  60
PWTVEEDKLL SDYIKREGEG RWRTLPKKAG LLRCGKSCRL RWMNYLRPSV KRGHISSDEE  120
DLILRLHRLL GNRWSLIAGR IPGRTDNEIK NYWNTHLSKK LISQGIDPKT HKPFLLPSLN  180
PNKPEIVKNK LLDHHHSSSS TVVDHQYDSV SNINYVPFAL QNSTNLQIGD GMMDSINIHH  240
EQFVEVDDGP SKTMINNEDI NGVIDDDDDH MMMSSCNEDA FSTFLNSLIN DDMFNTIATI  300
PQHIQDNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25571615108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02551.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835287.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388501e-85MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A022RFX30.0A0A022RFX3_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-85myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]